| aa2int | Convert amino acid sequence from letter to integer representation |
| aa2nt | Convert amino acid sequence to nucleotide sequence |
| aacount | Count amino acids in sequence |
| abstract | |
| bioma.ExpressionSet method | Retrieve or set abstract describing experiment in ExpressionSet
object |
| addTitle (clustergram) | Add title to clustergram |
| addTitle (HeatMap) | Add title to heat map |
| addXLabel (clustergram) | Label x-axis of clustergram |
| addXLabel (HeatMap) | Label x-axis of heat map |
| addYLabel (clustergram) | Label y-axis of clustergram |
| addYLabel (HeatMap) | Label y-axis of heat map |
| affygcrma | Perform GC Robust Multi-array Average (GCRMA) procedure
on Affymetrix microarray probe-level data |
| affyinvarsetnorm | Perform rank invariant set normalization on probe intensities
from multiple Affymetrix CEL or DAT files |
| affyprobeaffinities | Compute Affymetrix probe affinities from their sequences
and MM probe intensities |
| affyprobeseqread | Read data file containing probe sequence information for Affymetrix GeneChip array |
| affyread | Read microarray data from Affymetrix GeneChip file |
| affyrma | Perform Robust Multi-array Average (RMA) procedure on Affymetrix microarray
probe-level data |
| affysnpannotread | Read Affymetrix Mapping DNA array data from CSV-format
annotation file |
| affysnpintensitysplit | Split Affymetrix SNP probe intensity information
for alleles A and B |
| affysnpquartets | Create table of SNP probe quartet results for Affymetrix probe
set |
| agferead | Read Agilent Feature Extraction Software file |
| allshortestpaths (biograph) | Find all shortest paths in biograph object |
| aminolookup | Find amino acid codes, integers, abbreviations, names,
and codons |
| atomiccomp | Calculate atomic composition of protein |
| basecount | Count nucleotides in sequence |
| baselookup | Find nucleotide codes, integers, names, and complements |
| biograph object | Data structure containing generic interconnected data
used to implement directed graph |
| biograph | Create biograph
object |
| bioma.data.ExptData | Contain data values from microarray experiment |
| bioma.data.MetaData | Contain metadata from microarray experiment |
| bioma.data.MIAME | Contain experiment information from microarray gene expression
experiment |
| bioma.ExpressionSet | Contain data from microarray gene expression experiment |
| blastformat | Create local BLAST database |
| blastlocal | Perform search on local BLAST database to create BLAST
report |
| blastncbi | Create remote NCBI BLAST report request ID or link to
NCBI BLAST report |
| blastread | Read data from NCBI BLAST report file |
| blastreadlocal | Read data from local BLAST report |
| blosum | Return BLOSUM scoring matrix |
| celintensityread | Read probe intensities from Affymetrix CEL files |
| cghcbs | Perform circular binary segmentation (CBS) on array-based
comparative genomic hybridization (aCGH) data |
| cghfreqplot | Display frequency of DNA copy number alterations across
multiple samples |
| chromosomeplot | Plot chromosome ideogram with G-banding pattern |
| classperf | Evaluate performance of classifier |
| cleave | Cleave amino acid sequence with enzyme |
| cleavelookup | Find cleavage rule for enzyme or compound |
| cluster (phytree) | Validate clusters in phylogenetic tree |
| clustergram object | Object containing hierarchical clustering analysis data |
| clustergram | Compute hierarchical clustering, display dendrogram and
heat map, and create clustergram
object |
| clusterGroup (clustergram) | Select cluster group |
| codonbias | Calculate codon frequency for each amino acid coded for
in nucleotide sequence |
| codoncount | Count codons in nucleotide sequence |
| colnames (DataMatrix) | Retrieve or set column names of DataMatrix object |
| combine | |
| bioma.data.ExptData method | Combine two ExptData objects |
| bioma.data.MetaData method | Combine two MetaData objects |
| bioma.data.MIAME method | Combine two MIAME objects |
| conncomp (biograph) | Find strongly or weakly connected components in biograph
object |
| cpgisland | Locate CpG islands in DNA sequence |
| crossvalind | Generate cross-validation indices |
| cytobandread | Read cytogenetic banding information |
| DataMatrix object | Data structure encapsulating data and metadata from microarray
experiment so that it can be indexed by gene or probe identifiers
and by sample identifiers |
| DataMatrix | Create DataMatrix
object |
| dayhoff | Return Dayhoff scoring matrix |
| dimercount | Count dimers in nucleotide sequence |
| disp (DataMatrix) | Display DataMatrix object |
| dmarrayfun (DataMatrix) | Apply function to each element in DataMatrix object |
| dmbsxfun (DataMatrix) | Apply element-by-element binary operation to two DataMatrix
objects with singleton expansion enabled |
| dmNames | |
| bioma.data.ExptData method | Retrieve or set Name properties of
DataMatrix objects in ExptData object |
| dmwrite (DataMatrix) | Write DataMatrix object to text file |
| dna2rna | Convert DNA sequence to RNA sequence |
| dnds | Estimate synonymous and nonsynonymous substitution rates |
| dndsml | Estimate synonymous and nonsynonymous substitution rates
using maximum likelihood method |
| dolayout (biograph) | Calculate node positions and edge trajectories |
| double (DataMatrix) | Convert DataMatrix object to double-precision array |
| elementData | |
| bioma.ExpressionSet method | Retrieve or set data element (DataMatrix object) in ExpressionSet
object |
| bioma.data.ExptData method | Retrieve or set data element (DataMatrix object) in ExptData
object |
| elementNames | |
| bioma.ExpressionSet method | Retrieve or set element names of DataMatrix objects in
ExpressionSet object |
| bioma.data.ExptData method | Retrieve or set element names of DataMatrix objects in
ExptData object |
| emblread | Read data from EMBL file |
| eq (DataMatrix) | Test DataMatrix objects for equality |
| evalrasmolscript | Send RasMol script commands to Molecule Viewer window |
| expressions | |
| bioma.ExpressionSet method | Retrieve or set Expressions DataMatrix
object from ExpressionSet object |
| exprprofrange | Calculate range of gene expression profiles |
| exprprofvar | Calculate variance of gene expression profiles |
| exprWrite | |
| bioma.ExpressionSet method | Write expression values in ExpressionSet object to text
file |
| exptData | |
| bioma.ExpressionSet method | Retrieve or set experiment data in ExpressionSet object |
| exptInfo | |
| bioma.ExpressionSet method | Retrieve or set experiment information in ExpressionSet
object |
| fastainfo | Return information about FASTA file |
| fastaread | Read data from FASTA file |
| fastawrite | Write to file using FASTA format |
| fastqinfo | Return information about FASTQ file |
| fastqread | Read data from FASTQ file |
| fastqwrite | Write to file using FASTQ format |
| featureData | |
| bioma.ExpressionSet method | Retrieve or set feature metadata in ExpressionSet object |
| featureNames | |
| bioma.ExpressionSet method | Retrieve or set feature names in ExpressionSet object |
| bioma.data.ExptData method | Retrieve or set feature names in ExptData object |
| featuresmap | Draw linear or circular map of features from GenBank structure |
| featuresparse | Parse features from GenBank, GenPept, or EMBL data |
| featureVarDesc | |
| bioma.ExpressionSet method | Retrieve or set feature variable descriptions in ExpressionSet
object |
| featureVarNames | |
| bioma.ExpressionSet method | Retrieve or set feature variable names in ExpressionSet
object |
| featureVarValues | |
| bioma.ExpressionSet method | Retrieve or set feature variable data values in ExpressionSet
object |
| galread | Read microarray data from GenePix array list file |
| gcrma | Perform GC Robust Multi-array Average (GCRMA) background
adjustment, quantile normalization, and median-polish summarization
on Affymetrix microarray probe-level data |
| gcrmabackadj | Perform GC Robust Multi-array Average (GCRMA) background
adjustment on Affymetrix microarray probe-level data using sequence
information |
| ge (DataMatrix) | Test DataMatrix objects for greater than or equal to |
| genbankread | Read data from GenBank file |
| geneentropyfilter | Remove genes with low entropy expression values |
| genelowvalfilter | Remove gene profiles with low absolute values |
| geneont | |
| class | Data structure containing Gene Ontology (GO) information |
| constructor | Create geneont object and term objects |
| generangefilter | Remove gene profiles with small profile ranges |
| geneticcode | Return nucleotide codon to amino acid mapping for genetic
code |
| genevarfilter | Filter genes with small profile variance |
| genpeptread | Read data from GenPept file |
| geoseriesread | Read Gene Expression Omnibus (GEO) Series (GSE) format
data |
| geosoftread | Read Gene Expression Omnibus (GEO) SOFT format data |
| get (biograph) | Retrieve information about biograph object |
| get (clustergram) | Retrieve information about clustergram object |
| get (DataMatrix) | Retrieve information about DataMatrix object |
| get (phytree) | Retrieve information about phylogenetic tree object |
| getancestors (biograph) | Find ancestors in biograph object |
| getancestors | |
| geneont method | Find terms that are ancestors of specified Gene Ontology
(GO) term |
| getblast | Retrieve BLAST report from NCBI Web site |
| getbyname (phytree) | Branches and leaves from phytree object |
| getcanonical (phytree) | Calculate canonical form of phylogenetic tree |
| getdescendants (biograph) | Find descendants in biograph object |
| getdescendants | |
| geneont method | Find terms that are descendants of specified Gene Ontology
(GO) term |
| getedgesbynodeid (biograph) | Get handles to edges in biograph object |
| getembl | Retrieve sequence information from EMBL database |
| getgenbank | Retrieve sequence information from GenBank database |
| getgenpept | Retrieve sequence information from GenPept database |
| getgeodata | Retrieve Gene Expression Omnibus (GEO) format data |
| gethmmalignment | Retrieve multiple sequence alignment associated with hidden
Markov model (HMM) profile from PFAM database |
| gethmmprof | Retrieve hidden Markov model (HMM) profile from PFAM database |
| gethmmtree | Retrieve phylogenetic tree data from PFAM database |
| getmatrix (biograph) | Get connection matrix from biograph object |
| getmatrix | |
| geneont method | Convert geneont object into relationship matrix |
| getmatrix (phytree) | Convert phytree object into relationship matrix |
| getnewickstr (phytree) | Create Newick-formatted string |
| getnodesbyid (biograph) | Get handles to nodes |
| getpdb | Retrieve protein structure data from Protein Data Bank
(PDB) database |
| getrelatives (biograph) | Find relatives in biograph object |
| getrelatives | |
| geneont method | Find terms that are relatives of specified Gene Ontology
(GO) term |
| goannotread | Read annotations from Gene Ontology annotated file |
| gonnet | Return Gonnet scoring matrix |
| gprread | Read microarray data from GenePix Results (GPR) file |
| graphallshortestpaths | Find all shortest paths in graph |
| graphconncomp | Find strongly or weakly connected components in graph |
| graphisdag | Test for cycles in directed graph |
| graphisomorphism | Find isomorphism between two graphs |
| graphisspantree | Determine if tree is spanning tree |
| graphmaxflow | Calculate maximum flow in directed graph |
| graphminspantree | Find minimal spanning tree in graph |
| graphpred2path | Convert predecessor indices to paths |
| graphshortestpath | Solve shortest path problem in graph |
| graphtopoorder | Perform topological sort of directed acyclic graph |
| graphtraverse | Traverse graph by following adjacent nodes |
| gt (DataMatrix) | Test DataMatrix objects for greater than |
| HeatMap object | Object containing matrix and heat map display properties |
| HeatMap | Display heat map of matrix data and create HeatMap object |
| hmmprofalign | Align query sequence to profile using hidden Markov model
alignment |
| hmmprofestimate | Estimate profile hidden Markov model (HMM) parameters using pseudocounts |
| hmmprofgenerate | Generate random sequence drawn from profile hidden Markov
model (HMM) |
| hmmprofmerge | Concatenate prealigned strings of several sequences to profile
hidden Markov model (HMM) |
| hmmprofstruct | Create or edit hidden Markov model (HMM) profile structure |
| horzcat (DataMatrix) | Concatenate DataMatrix objects horizontally |
| ilmnbslookup | Look up Illumina BeadStudio target (probe) sequence
and annotation information |
| ilmnbsread | Read gene expression data exported from Illumina BeadStudio software |
| imageneread | Read microarray data from ImaGene Results file |
| int2aa | Convert amino acid sequence from integer to letter representation |
| int2nt | Convert nucleotide sequence from integer to letter representation |
| isdag (biograph) | Test for cycles in biograph object |
| isempty | |
| bioma.data.ExptData method | Determine whether ExptData object is empty |
| bioma.data.MetaData method | Determine whether MetaData object is empty |
| bioma.data.MIAME method | Determine whether MIAME object is empty |
| isequal (DataMatrix) | Test DataMatrix objects for equality |
| isequalwithequalnans (DataMatrix) | Test DataMatrix objects for equality, treating NaNs as
equal |
| isoelectric | Estimate isoelectric point for amino acid sequence |
| isomorphism (biograph) | Find isomorphism between two biograph objects |
| isotopicdist | Calculate high-resolution isotope mass distribution and
density function |
| isspantree (biograph) | Determine if tree created from biograph object is spanning
tree |
| jcampread | Read JCAMP-DX-formatted files |
| joinseq | Join two sequences to produce shortest supersequence |
| knnclassify | Classify data using nearest neighbor method |
| knnimpute | Impute missing data using nearest-neighbor method |
| ldivide (DataMatrix) | Left array divide DataMatrix objects |
| le (DataMatrix) | Test DataMatrix objects for less than or equal to |
| localalign | Return local optimal and suboptimal alignments between
two sequences |
| lt (DataMatrix) | Test DataMatrix objects for less than |
| maboxplot | Create box plot for microarray data |
| mafdr | Estimate false discovery rate (FDR) of differentially
expressed genes from two experimental conditions or phenotypes |
| magetfield | Extract data from microarray structure |
| maimage | Spatial image for microarray data |
| mainvarsetnorm | Perform rank invariant set normalization on gene expression
values from two experimental conditions or phenotypes |
| mairplot | Create intensity versus ratio scatter plot of microarray
data |
| maloglog | Create loglog plot of microarray data |
| malowess | Smooth microarray data using Lowess method |
| manorm | Normalize microarray data |
| mapcaplot | Create Principal Component Analysis (PCA) plot of microarray
data |
| mattest | Perform two-sample t-test to evaluate differential expression
of genes from two experimental conditions or phenotypes |
| mavolcanoplot | Create significance versus gene expression ratio (fold
change) scatter plot of microarray data |
| max (DataMatrix) | Return maximum values in DataMatrix object |
| maxflow (biograph) | Calculate maximum flow in biograph object |
| mean (DataMatrix) | Return average or mean values in DataMatrix object |
| median (DataMatrix) | Return median values in DataMatrix object |
| microplateplot | Display visualization of microtiter plate |
| min (DataMatrix) | Return minimum values in DataMatrix object |
| minspantree (biograph) | Find minimal spanning tree in biograph object |
| minus (DataMatrix) | Subtract DataMatrix objects |
| molweight | Calculate molecular weight of amino acid sequence |
| molviewer | Display and manipulate 3-D molecule structure |
| msalign | Align peaks in signal to reference peaks |
| msbackadj | Correct baseline of signal with peaks |
| msdotplot | Plot set of peak lists from LC/MS or GC/MS data set |
| msheatmap | Create pseudocolor image of set of mass spectra |
| mslowess | Smooth signal with peaks using nonparametric method |
| msnorm | Normalize set of signals with peaks |
| mspalign | Align mass spectra from multiple peak lists from LC/MS
or GC/MS data set |
| mspeaks | Convert raw peak data to peak list (centroided data) |
| msppresample | Resample signal with peaks while preserving peaks |
| msresample | Resample signal with peaks |
| mssgolay | Smooth signal with peaks using least-squares polynomial |
| msviewer | Explore mass spectrum or set of mass spectra |
| multialign | Align multiple sequences using progressive method |
| multialignread | Read multiple sequence alignment file |
| multialignviewer | Display and interactively adjust multiple sequence alignment |
| multialignwrite | Write multiple alignment to file |
| mzcdf2peaks | Convert mzCDF structure to peak list |
| mzcdfinfo | Return information about netCDF file containing mass spectrometry
data |
| mzcdfread | Read mass spectrometry data from netCDF file |
| mzxml2peaks | Convert mzXML structure to peak list |
| mzxmlinfo | Return information about mzXML file |
| mzxmlread | Read data from mzXML file |
| ndims (DataMatrix) | Return number of dimensions in DataMatrix object |
| ne (DataMatrix) | Test DataMatrix objects for inequality |
| nmercount | Count n-mers in nucleotide or amino acid sequence |
| nt2aa | Convert nucleotide sequence to amino acid sequence |
| nt2int | Convert nucleotide sequence from letter to integer representation |
| ntdensity | Plot density of nucleotides along sequence |
| nuc44 | Return NUC44 scoring matrix for nucleotide sequences |
| num2goid | Convert numbers to Gene Ontology IDs |
| numel (DataMatrix) | Return number of elements in DataMatrix object |
| nwalign | Globally align two sequences using Needleman-Wunsch algorithm |
| oligoprop | Calculate sequence properties of DNA oligonucleotide |
| optimalleaforder | Determine optimal leaf ordering for hierarchical binary
cluster tree |
| palindromes | Find palindromes in sequence |
| pam | Return Point Accepted Mutation (PAM) scoring matrix |
| pdbdistplot | Visualize intermolecular distances in Protein Data Bank
(PDB) file |
| pdbread | Read data from Protein Data Bank (PDB) file |
| pdbsuperpose | Superpose 3-D structures of two proteins |
| pdbtransform | Apply linear transformation to 3-D structure of molecule |
| pdbwrite | Write to file using Protein Data Bank (PDB) format |
| pdist (phytree) | Calculate pairwise patristic distances in phytree object |
| pfamhmmread | Read data from PFAM HMM-formatted file |
| phytree object | Data structure containing phylogenetic tree |
| phytree | Create phytree
object |
| phytreeread | Read phylogenetic tree file |
| phytreetool | View, edit, and explore phylogenetic tree data |
| phytreewrite | Write phylogenetic tree object to Newick-formatted file |
| plot (clustergram) | Render clustergram and dendrograms for clustergram object |
| plot (DataMatrix) | Draw 2-D line plot of DataMatrix object |
| plot (HeatMap) | Render heat map for HeatMap object |
| plot (phytree) | Draw phylogenetic tree |
| plus (DataMatrix) | Add DataMatrix objects |
| power (DataMatrix) | Array power DataMatrix objects |
| probelibraryinfo | Create table of probe set library information |
| probesetlink | Display probe set information on NetAffx Web site |
| probesetlookup | Look up information for Affymetrix probe set |
| probesetplot | Plot Affymetrix probe set intensity values |
| probesetvalues | Create table of Affymetrix probe set intensity values |
| profalign | Align two profiles using Needleman-Wunsch global alignment |
| proteinplot | Open Protein Plot window to investigate properties of
amino acid sequence |
| proteinpropplot | Plot properties of amino acid sequence |
| prune (phytree) | Remove branch nodes from phylogenetic tree |
| pubMedID | |
| bioma.ExpressionSet method | Retrieve or set PubMed IDs in ExpressionSet object |
| quantilenorm | Quantile normalization over multiple arrays |
| ramachandran | Draw Ramachandran plot for Protein Data Bank (PDB) data |
| randfeatures | Generate randomized subset of features |
| randseq | Generate random sequence from finite alphabet |
| rankfeatures | Rank key features by class separability criteria |
| rdivide (DataMatrix) | Right array divide DataMatrix objects |
| rebasecuts | Find restriction enzymes that cut nucleotide sequence |
| redbluecmap | Create red and blue colormap |
| redgreencmap | Create red and green colormap |
| reorder (phytree) | Reorder leaves of phylogenetic tree |
| reroot (phytree) | Change root of phylogenetic tree |
| restrict | Split nucleotide sequence at restriction site |
| revgeneticcode | Return reverse mapping (amino acid to nucleotide codon)
for genetic code |
| rmabackadj | Perform background adjustment on Affymetrix microarray
probe-level data using Robust Multi-array Average (RMA) procedure |
| rmasummary | Calculate gene expression values from Affymetrix microarray
probe-level data using Robust Multi-array Average (RMA) procedure |
| rna2dna | Convert RNA sequence to DNA sequence |
| rnaconvert | Convert secondary structure of RNA sequence between bracket
and matrix notations |
| rnafold | Predict minimum free-energy secondary structure of RNA
sequence |
| rnaplot | Draw secondary structure of RNA sequence |
| rownames (DataMatrix) | Retrieve or set row names of DataMatrix object |
| samplealign | Align two data sets containing sequential observations
by introducing gaps |
| sampleData | |
| bioma.ExpressionSet method | Retrieve or set sample metadata in ExpressionSet object |
| sampleNames | |
| bioma.ExpressionSet method | Retrieve or set sample names in ExpressionSet object |
| bioma.data.ExptData method | Retrieve or set sample names in ExptData object |
| bioma.data.MetaData method | Retrieve or set sample names in MetaData object |
| sampleVarDesc | |
| bioma.ExpressionSet method | Retrieve or set sample variable descriptions in ExpressionSet
object |
| sampleVarNames | |
| bioma.ExpressionSet method | Retrieve or set sample variable names in ExpressionSet
object |
| sampleVarValues | |
| bioma.ExpressionSet method | Retrieve or set sample variable values in ExpressionSet
object |
| scfread | Read trace data from SCF file |
| select (phytree) | Select tree branches and leaves in phytree object |
| seq2regexp | Convert sequence with ambiguous characters to regular
expression |
| seqcomplement | Calculate complementary strand of nucleotide sequence |
| seqconsensus | Calculate consensus sequence |
| seqdisp | Format long sequence output for easy viewing |
| seqdotplot | Create dot plot of two sequences |
| seqinsertgaps | Insert gaps into nucleotide or amino acid sequence |
| seqlinkage | Construct phylogenetic tree from pairwise distances |
| seqlogo | Display sequence logo for nucleotide or amino acid sequences |
| seqmatch | Find matches for every string in library |
| seqneighjoin | Neighbor-joining method for phylogenetic tree reconstruction |
| seqpdist | Calculate pairwise distance between sequences |
| seqprofile | Calculate sequence profile from set of multiply aligned
sequences |
| seqrcomplement | Calculate reverse complementary strand of nucleotide sequence |
| seqreverse | Calculate reverse strand of nucleotide sequence |
| seqshoworfs | Display open reading frames in sequence |
| seqshowwords | Graphically display words in sequence |
| seqtool | Open Sequence Tool window to interactively explore biological
sequences |
| seqwordcount | Count number of occurrences of word in sequence |
| set (biograph) | Set property of biograph object |
| set (clustergram) | Set property of clustergram object |
| set (DataMatrix) | Set property of DataMatrix object |
| sffinfo | Return information about SFF file |
| sffread | Read data from SFF file |
| shortestpath (biograph) | Solve shortest path problem in biograph object |
| showalignment | Display color-coded sequence alignment |
| showhmmprof | Plot hidden Markov model (HMM) profile |
| single (DataMatrix) | Convert DataMatrix object to single-precision array |
| size | |
| bioma.ExpressionSet method | Return size of ExpressionSet object |
| bioma.data.ExptData method | Return size of ExptData object |
| bioma.data.MetaData method | Return size of MetaData object |
| sortcols (DataMatrix) | Sort columns of DataMatrix object in ascending or descending
order |
| sortrows (DataMatrix) | Sort rows of DataMatrix object in ascending or descending
order |
| sptread | Read data from SPOT file |
| std (DataMatrix) | Return standard deviation values in DataMatrix object |
| subtree (phytree) | Extract phylogenetic subtree |
| sum (DataMatrix) | Return sum of elements in DataMatrix object |
| svmclassify | Classify data using support vector machine |
| svmsmoset | Create or edit Sequential Minimal Optimization (SMO) options
structure |
| svmtrain | Train support vector machine classifier |
| swalign | Locally align two sequences using Smith-Waterman algorithm |
| term | Data structure containing information about Gene Ontology
(GO) term |
| tgspcinfo | Return information about SPC file |
| tgspcread | Read data from SPC file |
| times (DataMatrix) | Multiply DataMatrix objects |
| topoorder (biograph) | Perform topological sort of directed acyclic graph extracted
from biograph object |
| traceplot | Draw nucleotide trace plots |
| traverse (biograph) | Traverse biograph object by following adjacent nodes |
| var (DataMatrix) | Return variance values in DataMatrix object |
| variableDesc | |
| bioma.data.MetaData method | Retrieve or set variable descriptions for samples in MetaData
object |
| variableNames | |
| bioma.data.MetaData method | Retrieve or set variable names for samples in MetaData
object |
| variableValues | |
| bioma.data.MetaData method | Retrieve or set variable values for samples in MetaData
object |
| varValuesTable | |
| bioma.data.MetaData method | Create 2-D graphic table GUI of variable values in MetaData
object |
| vertcat (DataMatrix) | Concatenate DataMatrix objects vertically |
| view (biograph) | Draw figure from biograph object |
| view (clustergram) | View clustergram and dendrograms of clustergram object |
| view (HeatMap) | View heat map of HeatMap object |
| view (phytree) | View phylogenetic tree |
| weights (phytree) | Calculate weights for phylogenetic tree |
| zonebackadj | Perform background adjustment on Affymetrix microarray
probe-level data using zone-based method |
Store 
Function Reference
