Bioinformatics Toolbox™

getmatrix (biograph) - Get connection matrix from biograph object

Syntax

[Matrix, ID, Distances] = getmatrix(BGObj)

Arguments

Description

[Matrix, ID, Distances] = getmatrix(BGObj) converts the biograph object, BiographObj, into a logical sparse matrix, Matrix, in which 1 indicates that a node (row index) is connected to another node (column index). ID is a cell array of strings listing the ID properties for each node, and corresponds to the rows and columns of Matrix. Distances is a column vector with one entry for every nonzero entry in Matrix traversed column-wise and representing the respective Weight property for each edge.

Examples

 cm = [0 1 1 0 0;2 0 0 4 4;4 0 0 0 0;0 0 0 0 2;4 0 5 0 0];
 bg = biograph(cm);
 [cm, IDs, dist] = getmatrix(bg)
 

See Also

Bioinformatics Toolbox™ function: biograph (object constructor)

Bioinformatics Toolbox object: biograph object

Bioinformatics Toolbox methods of a biograph object: dolayout, getancestors, getdescendants, getedgesbynodeid, getnodesbyid, getrelatives, view

getedgesbynodeid (biograph)

getmatrix (geneont)