multialignviewer - Open viewer for multiple sequence alignments

Syntax

multialignviewer(Alignment)

multialignviewerAlignment, 'Alphabet', AlphabetValue)

Arguments

AlignmentA structure with a field Sequence, a character array, or a file name.
AlphabetValueString specifying the alphabet type for the sequences. Choices are 'AA' for amino acids or 'NT' for nucleotides. Default is 'AA'.

Description

The multialignviewer is an interactive graphical user interface (GUI) for viewing multiple sequence alignments.

multialignviewer(Alignment) loads a group of previously multiple aligned sequences into the viewer. Alignment is a structure with a field Sequence, a character array, or a file name.


multialignviewerAlignment, 'Alphabet', AlphabetValue)
specifies the alphabet type for the sequences. AlphabetValue can be 'AA' for amino acids or 'NT' for nucleotides. Default is 'AA'. If AlphabetValue is not specified, multialignviewer guesses the alphabet type.

Examples

multialignviewer('aagag.aln')

See Also

Bioinformatics Toolbox™ functions: fastaread, gethmmalignment, multialign, multialignread, seqtool

  


 © 1984-2008- The MathWorks, Inc.    -   Site Help   -   Patents   -   Trademarks   -   Privacy Policy   -   Preventing Piracy   -   RSS