nuc44 - Return NUC44 scoring matrix for nucleotide sequences
Syntax
ScoringMatrix = nuc44
[ScoringMatrix, MatrixInfo]
= nuc44
Description
ScoringMatrix = nuc44 returns
the scoring matrix. The nuc44 scoring matrix uses
ambiguous nucleotide codes and probabilities rounded to the nearest
integer.
Scale = 0.277316
Expected score = -1.7495024, Entropy = 0.5164710 bits
Lowest score = -4, Highest score = 5
Order: A C G T R Y K M S W B D H V
N
[ScoringMatrix, MatrixInfo]
= nuc44 returns a structure with information about the
matrix with fields Name and Order.
See Also
Bioinformatics Toolbox functions: blosum, dayhoff, gonnet, localalign, nwalign, pam ,swalign
 | ntdensity | | num2goid |  |
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