String of single-letter codes
Row vector of integers
MATLAB structure containing a Sequence field that contains an amino acid or nucleotide sequence, such as returned by fastaread, fastqread, getgenpept, genpeptread, getpdb, pdbread, emblread, getembl, genbankread, or getgenbank
String specifying a file name with an extension of .gbk, .gpt, .fasta, .fa, or .ebi.

AlphabetValue

String specifying an alphabet for the sequence, Seq. Default is 'AA', except when all of the symbols in the sequence are A, C, G, T, or -, then default is 'NT'.

Description

seqtool opens the Sequence Tool window. For examples of using this window, see Sequence Tool.

seqtool(Seq) opens the Sequence Tool window and loads Seq, a sequence, into the window.

seqtool('close') closes the Sequence Tool window.

seqtool(Seq, 'Alphabet', AlphabetValue) specifies an alphabet for the sequence, Seq. Default is 'AA', except when all of the symbols in the sequence are A, C, G, T, and -, then AlphabetValue defaults to 'NT'. Use 'AA' when you want to force an amino acid sequence alphabet.

Examples

Retrieve a sequence from the GenBank database.
```
S = getgenbank('M10051');
```
Load the sequence into the Sequence Tool window.
```
seqtool(S)
```
Close the window.
```
seqtool('close')
```

seqtool - Open Sequence Tool window to interactively explore biological sequences

Syntax

Arguments

Description

Examples

See Also

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