Learn more about Bioinformatics Toolbox

Version 2.1 (R14SP2+) Bioinformatics Toolbox Software

This table summarizes what's new in Version 2.1 (Release 14SP2+)

New Features and Changes	Version Compatibility Considerations	Fixed Bugs and Known Problems	Related Documentation at Web Site
Yes Details below	No	Bug Reports	No

New features and changes introduced in this version are:

• Sequence Alignment Functions

• Sequence Statistics Functions

• Sequence Utilities Functions

• Phylogenetic Tree Functions

• Phylogenetic Tree Methods

• Microarray Functions

• Statistics Functions

Sequence Alignment Functions

• multialign — Align multiple sequences using a progressive method with Distributed Computing Toolbox™ support.

• multialignread — Read multiple sequence alignment file.

• profalign — Align two profiles using Needleman-Wunsch global alignment.

• showalignment — Updated to show multiply aligned sequences.

• seqpdist — Updated to calculate pairwise distances between observations with Distributed Computing Toolbox support.

Sequence Statistics Functions

• codonbias — Calculate codon frequency for each amino acid in a DNA sequence.

• cpgisland — Locate CpG islands in a DNA sequence.

Sequence Utilities Functions

• rebasecuts — Find restriction enzymes that cut a protein sequence.

• seqtool — Graphical User Interface (GUI) for single sequence analysis.

Phylogenetic Tree Functions

• dnds, dndsml — Estimate synonymous and nonsynonymous substitutions rates.

• seqneighjoin — Reconstruct a phylogenetic tree with a Neighbor-joining method.

Phylogenetic Tree Methods

• getcanonical — Calculate the canonical form of a phylogenetic tree.

• getnewwickstr — Create a Newick formatted string.

• reroot — Change the root of a phylogenetic tree.

• subtree — Extract a subtree.

• weights — Calculate weights for a phylogenetic tree.

Microarray Functions

probesetplot — Plot values for an Affymetrix CHP file probe set.

Statistics Functions

rankfeatures — Renamed function. The previous name was sqtlfeatures.

Version 2.1.1 (R14SP3) Bioinformatics Toolbox Software

Version 2.0.1 (R14SP2) Bioinformatics Toolbox Software

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