Contents

Index

• Getting Started

• Sequence Analysis

• Example: Sequence Statistics

Overview of Example

Determining Nucleotide Content

Reading Sequence Information

Determining Nucleotide Composition

Determining Codon Composition

Open Reading Frames

Amino Acid Conversion and Composition

• Example: Sequence Alignment

Overview of Example

Finding a Model Organism to Study

Retrieving Sequence Information from a Public Database

Searching a Public Database for Related Genes

Locating Protein Coding Sequences

Comparing Amino Acid Sequences

• Sequence Tool

Overview of the Sequence Tool

Importing a Sequence

Viewing Nucleotide Sequence Information

Searching for Words

Exploring Open Reading Frames

Viewing Amino Acid Sequence Statistics

Closing the Sequence Tool

• Multiple Sequence Alignment Viewer

Overview of the Multiple Sequence Alignment Viewer

Loading Sequence Data and Viewing the Phylogenetic Tree

Selecting a Subset of Data from the Phylogenetic Tree

Aligning Multiple Sequences

Adjusting Multiple Sequence Alignments Manually

Closing the Multiple Sequence Alignment Viewer

• Microarray Analysis

• Phylogenetic Analysis

• Release Notes

Learn more about Bioinformatics Toolbox

Sequence Analysis

Sequence analysis is the process you use to find information about a nucleotide or amino acid sequence using computational methods. Common tasks in sequence analysis are identifying genes, determining the similarity of two genes, determining the protein coded by a gene, and determining the function of a gene by finding a similar gene in another organism with a known function.

Examples

Example: Sequence Statistics

Example: Sequence Statistics

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