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sbioensembleplot - Show results of ensemble run using 2-D or 3-D plots

Syntax

sbioensembleplot(simdataObj) sbioensembleplot(simdataObj, Names) sbioensembleplot(simdataObj, Names, Time) FH = sbioensembleplot(simdataObj, Names) FH = sbioensembleplot(simdataObj, Names, Time)

Arguments

`simdataObj`	An object that contains simulation data. You can generate a `simdataObj` object using the function `sbioensemblerun`. All elements of `simdataObj` must contain data for the same states in the same model.
`Names`	Either a string or a cell array of strings. `Names` may include qualified names such as `'CompartmentName.SpeciesName'` or `'ReactionName.ParameterName'` to resolve ambiguities. Specifying `{}` for `Names` plots data for all states contained in `simdataObj`.
`Time`	A numeric scalar value. If the specified `Time` is not an element of the time vectors in `simdataObj`, then the function resamples `simdataObj` as necessary using linear interpolation.
`FH`	Array of handles to figure windows.

Description

sbioensembleplot(simdataObj) shows a 3-D shaded plot of time-varying distribution of all logged states in the SimData array simdataObj. The sbioensemblerun function plots an approximate distribution created by fitting a normal distribution to the data at every time step.

sbioensembleplot(simdataObj, Names) plots the distribution for the data specified by Names.

sbioensembleplot(simdataObj, Names, Time) plots a 2-D histogram of the actual data of the ensemble distribution of the states specified by Names at the particular time point Time.

FH = sbioensembleplot(simdataObj, Names) returns an array of handles FH, to the figure window for the 3-D distribution plot.

FH = sbioensembleplot(simdataObj, Names, Time) returns an array of handles FH, to the figure window for the 2-D histograms.

Examples

This example shows how to plot data from an ensemble run without interpolation.

The project file, radiodecay.sbproj, contains a model stored in a variable called m1. Load m1 into the MATLAB workspace.
```
sbioloadproject('radiodecay.sbproj','m1');
```
Change the solver of the active configuration set to be ssa. Also, adjust the LogDecimation property on the SolverOptions property of the configuration set to reduce the size of the data generated.
```
cs = getconfigset(m1, 'active');
set(cs, 'SolverType', 'ssa');
so = get(cs, 'SolverOptions');
set(so, 'LogDecimation', 10);
```
Perform an ensemble of 20 runs with no interpolation.
```
simdataObj = sbioensemblerun(m1, 20);
```
Create a 2-D distribution plot of the species 'z' at time = 1.0.
```
FH1 = sbioensembleplot(simdataObj, 'z', 1.0);
```

Create a 3-D shaded plot of both species.

FH2 = sbioensembleplot(simdataObj, {'x','z'});

sbioensembleplot - Show results of ensemble run using 2-D or 3-D plots

Syntax

Arguments

Description

Examples

See Also

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