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sbmlimport - Import SBML-formatted file

Syntax

modelObj = sbmlimport('FileName')

Description

modelObj = sbmlimport('FileName') imports a Systems Biology Markup Language (SBML) formatted file named FileName into MATLAB and creates a model object modelObj. FileName extensions are .sbml or .xml. Enter either a file name or a path and file name supported by your operating system. sbmlimport supports SBML Levels 1 and Level 2 Version 1.

For functional characteristics and limitations, see SBML Support in the SimBiology Getting Started Guide documentation.

Examples

Import SBML model:

 sbmlobj = sbmlimport('oscillator.xml');

References

Finney, A., Hucka, M., (2003). Systems Biology Markup Language (SBML) Level 2: Structures and facilities for model definitions. SBML.org.

Alternatives

Use the SimBiology desktop:

  1. In the MATLAB Command Window, type:

    simbiology

    The SimBiology desktop opens.

  2. Select File > New Project. The New Project Wizard opens.

  3. Add data using the Add Data pane, or click Next.

  4. In the Add Model pane, from the Select a model to add list, select Load model from file

  5. Browse to or specify the name of the project or SBML file.

  6. Click Next.

  7. In the Choose Analysis pane, select the analysis tasks to add to the model and click Finish.

    A new project with the selected specifications opens.

See Also

get | sbiosimulate | sbmlexport | set

  


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