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StatesToLog - Specify species data recorded

Description

The StatesToLog property indicates the species data to log during a simulation. This is the data returned in x during execution of (t,x) = sbiosimulate(modelObj). By default all species are logged.

Characteristics

Applies to	Object: RunTimeOptions
Data type	Object or vector of objects
Data values	Species objects to log. Default is All.
Access	Read/write

Examples

This example shows how to assign species to StatesToLog.

1. Create a model object by importing the file oscillator.xml.

   modelObj  = sbmlimport('oscillator');

2. Retrieve the first and second species in modelObj.

   speciesObj1 = modelObj.Species(1);
   speciesObj2 = modelObj.Species(2);

3. Retrieve the configsetObj of modelObj.

   configsetObj = getconfigset(modelObj);

4. Set the StatesToLog to record three species: two using the retrieved species objects and one using indexing and view the species in StatesToLog.

   set (configsetObj.RuntimeOptions, 'StatesToLog', [speciesObj1, speciesObj2, modelObj.Species(3)]);
   get(configsetObj.RuntimeOptions, 'StatesToLog')

SpeciesVariables

Stoichiometry

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