Documentation

This is machine translation

Translated by Microsoft
Mouseover text to see original. Click the button below to return to the English verison of the page.

Note: This page has been translated by MathWorks. Please click here
To view all translated materals including this page, select Japan from the country navigator on the bottom of this page.

getTranscriptNames

Class: GTFAnnotation

Retrieve unique transcript names from GTFAnnotation object

Syntax

Transcripts = getTranscriptNames(AnnotObj)

Description

Transcripts = getTranscriptNames(AnnotObj) returns Transcripts, a cell array of character vectors specifying the unique transcript names associated with annotations in AnnotObj.

Input Arguments

AnnotObj

Object of the GTFAnnotation class.

Output Arguments

Transcripts

Cell array of character vectors specifying the unique transcript names associated with annotations in AnnotObj.

Examples

Construct a GTFAnnotation object from a GTF-formatted file that is provided with Bioinformatics Toolbox™, and then retrieve a list of the unique transcript names from the object:

% Construct a GTFAnnotation object from a GTF file
GTFAnnotObj = GTFAnnotation('hum37_2_1M.gtf');
% Get transcript names from object
transcriptNames = getTranscriptNames(GTFAnnotObj)
transcriptNames = 

    'uc002qvu.2'
    'uc002qvv.2'
    'uc002qvw.2'
    'uc002qvx.2'
    'uc002qvy.2'
    'uc002qvz.2'
    'uc002qwa.2'
    'uc002qwb.2'
    'uc002qwc.1'
    'uc002qwd.2'
    'uc002qwe.3'
    'uc002qwf.2'
    'uc002qwg.2'
    'uc002qwh.2'
    'uc002qwi.3'
    'uc002qwk.2'
    'uc002qwl.2'
    'uc002qwm.1'
    'uc002qwn.1'
    'uc002qwo.1'
    'uc002qwp.2'
    'uc002qwq.2'
    'uc010ewe.2'
    'uc010ewf.1'
    'uc010ewg.2'
    'uc010ewh.1'
    'uc010ewi.2'
    'uc010yim.1'
Was this topic helpful?