Visualize and explore alignments
The NGS Browser app lets you visualize and explore the alignment of reads to a reference sequence.
Visualize short-read data aligned to a nucleotide reference sequence, and compare multiple data sets aligned against a common reference sequence.
View coverage of different regions of the reference sequence.
Investigate quality and other details of aligned reads.
Identify polymorphisms and visualize insertions and deletions.
Retrieve feature annotations relative to a specific region of the reference sequence.
MATLAB® Toolstrip: On the Apps tab, under Computational Biology, click the app icon.
MATLAB command prompt: Enter
Create a BioMap object from a SAM-formatted file.
b = BioMap('ex1.sam');
Display the object in the NGS Browser.
ngsbrowser opens the NGS Browser app.
a BioMap object
biomapObj containing sequence
alignment information and opens it in the app.