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Improve Performance of Element-wise MATLAB® Functions on the GPU using ARRAYFUN

This example shows how arrayfun can be used to run a MATLAB® function natively on the GPU. When the MATLAB function contains many element-wise operations, arrayfun can provide improved performance when compared to simply executing the MATLAB function directly on the GPU with gpuArray input data. The MATLAB function can be in its own file or can be a nested or anonymous function. It must contain only scalar operations and arithmetic.

We put the example into a function to allow nested functions:

function paralleldemo_gpu_arrayfun

Using Horner's Rule to Calculate Exponentials

Horner's rule allows the efficient evaluation of power series expansions. We will use it to calculate the first 10 terms of the power series expansion for the exponential function exp. We can implement this as a MATLAB function.

function y = horner(x)
%HORNER - series expansion for exp(x) using Horner's rule
y = 1 + x.*(1 + x.*((1 + x.*((1 + ...
        x.*((1 + x.*((1 + x.*((1 + x.*((1 + ...
        x.*((1 + x./9)./8))./7))./6))./5))./4))./3))./2));

Preparing horner for the GPU

To run this function on the GPU with minimal code changes, we could pass a gpuArray object as input to the horner function. Since horner contains only individual element-wise operations, we might not realize very good performance on the GPU when performing each operation one at a time. However, we can improve the performance by executing all of the element-wise operations in the horner function at one time using arrayfun.

To run this function on the GPU using arrayfun, we use a handle to the horner function. horner automatically adapts to different size and type inputs. We can compare the results computed on the GPU using both gpuArray objects and arrayfun with standard MATLAB CPU execution simply by evaluating the function directly.

hornerFcn = @horner;

Create the Input Data

We create some inputs of different types and sizes, and use gpuArray to send them to the GPU.

data1  = rand( 2000, 'single' );
data2  = rand( 1000, 'double' );
gdata1 = gpuArray( data1 );
gdata2 = gpuArray( data2 );

Evaluate horner on the GPU

To evaluate the horner function on the GPU, we have two choices. With minimal code changes we can evaluate the original function on the GPU by providing a gpuArray object as input. However, to improve the performance on the GPU call arrayfun, using the same calling convention as the original MATLAB function.

We can compare the accuracy of the results by evaluating the original function directly in MATLAB on the CPU. We expect some slight numerical differences because the floating-point arithmetic on the GPU does not precisely match the arithmetic performed on the CPU.

gresult1 = arrayfun( hornerFcn, gdata1 );
gresult2 = arrayfun( hornerFcn, gdata2 );

comparesingle = max( max( abs( gresult1 - horner( data1 ) ) ) );
comparedouble = max( max( abs( gresult2 - horner( data2 ) ) ) );
fprintf( 'Maximum discrepancy for single precision: %g\n', comparesingle );
fprintf( 'Maximum discrepancy for double precision: %g\n', comparedouble );
Maximum discrepancy for single precision: 2.38419e-07
Maximum discrepancy for double precision: 0

Comparing Performance between GPU and CPU

We can compare the performance of the GPU versions to the native MATLAB CPU version. Current generation GPUs have much better performance in single precision, so we compare that.

% CPU execution
hornerFcn( data1 );
tcpu = toc;

% GPU execution using only gpuArray objects
tgpuObject = gputimeit(@() hornerFcn(gdata1));

% GPU execution using gpuArray objects with arrayfun
tgpuArrayfun = gputimeit(@() arrayfun(hornerFcn, gdata1));

fprintf( 'Speed-up achieved using gpuArray objects only: %g\n',...
    tcpu / tgpuObject );
fprintf( 'Speed-up achieved using gpuArray objects with arrayfun: %g\n',...
    tcpu / tgpuArrayfun );
Speed-up achieved using gpuArray objects only: 12.2095
Speed-up achieved using gpuArray objects with arrayfun: 73.1566
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