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Classes in SimBiology

  • By Category | Alphabetical List
  • Modeling

    Build Models

    Model object Model and component information
    Compartment object Options for compartments
    Species object Options for compartment species
    Parameter object Parameter and scope information
    Reaction object Options for model reactions
    KineticLaw object Kinetic law information for reaction
    Rule object Hold rule for species and parameters
    Event object Store event information
    Root object Hold models, unit libraries, and abstract kinetic law libraries
    PKModelDesign object Helper object to construct pharmacokinetic model
    PKCompartment object Used by PKModelDesign to create SimBiology model
    PKModelMap object Define SimBiology model components' roles
    construct Construct SimBiology model from PKModelDesign object
    addCompartment Add compartment to PKModelDesign object

    Extend Modeling Environment

    Root object Hold models, unit libraries, and abstract kinetic law libraries
    AbstractKineticLaw object Kinetic law information in library
    Unit object Hold information about user-defined unit
    UnitPrefix object Hold information about user-defined unit prefix

    Simulation

    Simulate Responses to Biological Variability

    SimData object Simulation data storage
    Configset object Solver settings information for model simulation
    SolverOptions Specify model solver options
    RuntimeOptions Options for logged species
    CompileOptions Dimensional analysis and unit conversion options
    SimFunction object Function-like interface to execute SimBiology models

    Simulate Responses to Different Doses

    SimData object Simulation data storage
    ScheduleDose object Define drug dosing protocol
    RepeatDose object Define drug dosing protocol
    Configset object Solver settings information for model simulation
    SolverOptions Specify model solver options
    RuntimeOptions Options for logged species
    CompileOptions Dimensional analysis and unit conversion options
    SimFunction object Function-like interface to execute SimBiology models

    Scan Parameter Ranges

    SimData object Simulation data storage
    Configset object Solver settings information for model simulation
    SolverOptions Specify model solver options
    RuntimeOptions Options for logged species
    CompileOptions Dimensional analysis and unit conversion options
    SimFunction object Function-like interface to execute SimBiology models

    Calculate Sensitivities

    SensitivityAnalysisOptions Specify sensitivity analysis options
    SimData object Simulation data storage
    Configset object Solver settings information for model simulation
    SolverOptions Specify model solver options
    RuntimeOptions Options for logged species
    CompileOptions Dimensional analysis and unit conversion options
    SimFunction object Function-like interface to execute SimBiology models

    Estimation

    Import Data

    GroupedData object Table-like collection of data and metadata

    Nonlinear Regression

    GroupedData object Table-like collection of data and metadata
    EstimatedInfo object Object containing information about estimated model quantities
    LeastSquaresResults object Results object containing estimation results from least-squares regression
    OptimResults object Estimation results object, subclass of LeastSquaresResults
    NLINResults object Estimation results object, subclass of LeastSquaresResults

    Nonlinear Mixed-Effects Modeling

    CovariateModel object Define relationship between parameters and covariates
    GroupedData object Table-like collection of data and metadata
    EstimatedInfo object Object containing information about estimated model quantities
    NLMEResults object Results object containing estimation results from nonlinear mixed-effects modeling

    Deployment

    SimBiology.export.Model Exported SimBiology model object
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