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SimBiology Functions

Alphabetical List By Category
AbstractKineticLaw objectKinetic law information in library
addcompartmentCreate compartment object
addCompartmentAdd compartment to PKModelDesign object
addconfigsetCreate configuration set object and add to model object
adddoseAdd dose object to model
addeventAdd event object to model object
addparameterCreate parameter object and add to model or kinetic law object
addreactionCreate reaction object and add to model object
addruleCreate rule object and add to model object
addspeciesCreate species object and add to compartment object within model object
addvariantAdd variant to model
Compartment objectOptions for compartments
CompileOptionsDimensional analysis and unit conversion options
Configset objectSolver settings information for model simulation
constructConstruct SimBiology model from PKModelDesign object
CovariateModel objectDefine relationship between parameters and covariates
createSimFunctionCreate SimFunction object
EstimatedInfo objectObject containing information about estimated model quantities
Event objectStore event information
exportExport SimBiology models for deployment and standalone applications
findUnusedComponentsFind unused species, parameters, and compartments in a model
findUsages(AbstractKineticLaw)Find out how an AbstractKineticLaw object is used
findUsages(species,parameter,compartment)Find out how a species, parameter, or compartment is used in a model
findUsages(unit,unitprefix)Find out how a unit or unit prefix is used
getconfigsetGet configuration set object from model object
groupedData Table-like collection of data and metadata
KineticLaw objectKinetic law information for reaction
LeastSquaresResults objectResults object containing estimation results from least-squares regression
loadLoad variables from file into workspace
Model objectModel and component information
NLINResults objectEstimation results object, subclass of LeastSquaresResults
NLMEResults objectResults object containing estimation results from nonlinear mixed-effects modeling
OptimResults objectEstimation results object, subclass of LeastSquaresResults
Parameter objectParameter and scope information
ParameterConfidenceIntervalObject containing confidence interval results for estimated parameters
PKCompartment objectUsed by PKModelDesign to create SimBiology model
PKModelDesign objectHelper object to construct pharmacokinetic model
PKModelMap objectDefine SimBiology model components’ roles
PredictionConfidenceIntervalObject containing confidence interval results for model predictions
Reaction objectOptions for model reactions
RepeatDose objectDefine drug dosing protocol
Root objectHold models, unit libraries, and abstract kinetic law libraries
Rule objectHold rule for species and parameters
RuntimeOptionsOptions for logged species
sbioabstractkineticlawCreate kinetic law definition
sbioacceleratePrepare model object for accelerated simulations
sbioaddtolibraryAdd to user-defined library
sbioconvertunitsConvert unit and unit value to new unit
sbiocopylibraryCopy library to disk
sbiodoseConstruct dose object
sbioensembleplotShow results of ensemble run using 2-D or 3-D plots
sbioensemblerunMultiple stochastic ensemble runs of SimBiology model
sbioensemblestatsGet statistics from ensemble run data
sbiofitPerform nonlinear least-squares regression
sbiofitmixedFit nonlinear mixed-effects model (requires Statistics and Machine Learning Toolbox software)
sbiofitstatusplotPlot status of sbionlmefit or sbionlmefitsa
sbiolasterrorSimBiology last error message
sbiolastwarningSimBiology last warning message
sbioloadprojectLoad project from file
sbiomodelConstruct model object
sbioncaCompute noncompartmental analysis (NCA) parameters (requires Statistics and Machine Learning Toolbox)
sbioncaoptionsSpecify options to calculate noncompartmental analysis (NCA) parameters
sbionlinfitPerform nonlinear least-squares regression using SimBiology models (requires Statistics and Machine Learning Toolbox software)
sbionlmefitEstimate nonlinear mixed effects using SimBiology models (requires Statistics and Machine Learning Toolbox software)
sbionlmefitsaEstimate nonlinear mixed effects with stochastic EM algorithm (requires Statistics and Machine Learning Toolbox software)
sbionmfiledefNONMEM file definition object for sbionmimport
sbionmimportImport NONMEM-formatted data
sbioparamestimPerform parameter estimation
sbioparameterciCompute confidence intervals for estimated parameters (requires Statistics and Machine Learning Toolbox)
sbioplotPlot simulation results in one figure
sbiopredictionciCompute confidence intervals for model predictions (requires Statistics and Machine Learning Toolbox)
sbioremovefromlibrary Remove kinetic law, unit, or unit prefix from library
sbioresetDelete all model objects
sbiorootReturn SimBiology root object
sbiosampleerrorSample error based on error model and add noise to simulation data
sbiosampleparametersGenerate parameters by sampling covariate model (requires Statistics and Machine Learning Toolbox software)
sbiosaveprojectSave all models in root object
sbioselectSearch for objects with specified constraints
sbioshowunitprefixesShow unit prefixes in library
sbioshowunitsShow units in library
sbiosimulateSimulate SimBiology model
sbiosteadystate Find steady state of SimBiology model
sbiosubplotPlot simulation results in subplots
sbiotrellisPlot data or simulation results in trellis plot
sbiounitCreate user-defined unit
sbiounitcalculatorConvert value between units
sbiounitprefixCreate user-defined unit prefix
sbiovariantConstruct variant object
sbiowhosShow contents of project file, library file, or SimBiology root object
sbmlexportExport SimBiology model to SBML file
sbmlimportImport SBML-formatted file
ScheduleDose objectDefine drug dosing protocol
SensitivityAnalysisOptionsSpecify sensitivity analysis options
simbiologyOpen SimBiology desktop for modeling and simulation
SimBiology.export.ModelExported SimBiology model object
SimBiology.export.Model.acceleratePrepare exported SimBiology model for acceleration
SimBiology.export.Model.simulateSimulate exported SimBiology model
SimData objectSimulation data storage
SimFunction objectFunction-like interface to execute SimBiology models
SimFunctionSensitivity objectSimFunctionSensitivity object, subclass of SimFunction object
SolverOptionsSpecify model solver options
Species objectOptions for compartment species
Unit objectHold information about user-defined unit
UnitPrefix objectHold information about user-defined unit prefix
updateInitialAssignmentsUpdate initial assignment rules to remove order dependencies
Variant objectStore alternate component values
verifyValidate and verify SimBiology model
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