Simulate Responses to Biological Variability

Simulate biological variability to compare animal species, strains, mutants, or experimental conditions

Functions

sbiovariant Construct variant object
addvariant Add variant to model
sbiosimulate Simulate SimBiology model
sbioaccelerate Prepare model object for accelerated simulations
sbiosampleparameters Generate parameters by sampling covariate model
sbiosampleerror Sample error based on error model and add noise to simulation data
createSimFunction Create SimFunction object
sbioplot Plot simulation results in one figure
sbiosubplot Plot simulation results in subplots
sbiotrellis Plot data or simulation results in trellis plot
sbioensemblerun Multiple stochastic ensemble runs of SimBiology model
sbioensembleplot Show results of ensemble run using 2-D or 3-D plots
sbioensemblestats Get statistics from ensemble run data

Classes

SimData object Simulation data storage
Configset object Solver settings information for model simulation
SolverOptions Specify model solver options
RuntimeOptions Options for logged species
CompileOptions Dimensional analysis and unit conversion options
SimFunction object Function-like interface to execute SimBiology models
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