aoctool

Interactive analysis of covariance

Syntax

aoctool(x,y,group)
aoctool(x,y,group,alpha)
aoctool(x,y,group,alpha,xname,yname,gname)
aoctool(x,y,group,alpha,xname,yname,gname,displayopt)
aoctool(x,y,group,alpha,xname,yname,gname,displayopt,model)
h = aoctool(...)
[h,atab,ctab] = aoctool(...)
[h,atab,ctab,stats] = aoctool(...)

Description

aoctool(x,y,group) fits a separate line to the column vectors, x and y, for each group defined by the values in the array group. group may be a categorical variable, vector, character array, or cell array of strings. These types of models are known as one-way analysis of covariance (ANOCOVA) models. The output consists of three figures:

  • An interactive graph of the data and prediction curves

  • An ANOVA table

  • A table of parameter estimates

You can use the figures to change models and to test different parts of the model. More information about interactive use of the aoctool function appears in Analysis of Covariance Tool.

aoctool(x,y,group,alpha) determines the confidence levels of the prediction intervals. The confidence level is 100(1-alpha)%. The default value of alpha is 0.05.

aoctool(x,y,group,alpha,xname,yname,gname) specifies the name to use for the x, y, and g variables in the graph and tables. If you enter simple variable names for the x, y, and g arguments, the aoctool function uses those names. If you enter an expression for one of these arguments, you can specify a name to use in place of that expression by supplying these arguments. For example, if you enter m(:,2) as the x argument, you might choose to enter 'Col 2' as the xname argument.

aoctool(x,y,group,alpha,xname,yname,gname,displayopt) enables the graph and table displays when displayopt is 'on' (default) and suppresses those displays when displayopt is 'off'.

aoctool(x,y,group,alpha,xname,yname,gname,displayopt,model) specifies the initial model to fit. The value of model can be any of the following:

  • 'same mean' — Fit a single mean, ignoring grouping

  • 'separate means' — Fit a separate mean to each group

  • 'same line' — Fit a single line, ignoring grouping

  • 'parallel lines' — Fit a separate line to each group, but constrain the lines to be parallel

  • 'separate lines' — Fit a separate line to each group, with no constraints

h = aoctool(...) returns a vector of handles to the line objects in the plot.

[h,atab,ctab] = aoctool(...) returns cell arrays containing the entries in ANOVA table (atab) and the table of coefficient estimates (ctab). (You can copy a text version of either table to the clipboard by using the Copy Text item on the Edit menu.)

[h,atab,ctab,stats] = aoctool(...) returns a stats structure that you can use to perform a follow-up multiple comparison test. The ANOVA table output includes tests of the hypotheses that the slopes or intercepts are all the same, against a general alternative that they are not all the same. Sometimes it is preferable to perform a test to determine which pairs of values are significantly different, and which are not. You can use the multcompare function to perform such tests by supplying the stats structure as input. You can test either the slopes, the intercepts, or population marginal means (the heights of the curves at the mean x value).

Examples

This example illustrates how to fit different models non-interactively. After loading the smaller car data set and fitting a separate-slopes model, you can examine the coefficient estimates.

load carsmall
[h,a,c,s] = aoctool(Weight,MPG,Model_Year,0.05,...
                    '','','','off','separate lines');
c(:,1:2)
ans = 
  'Term'       'Estimate'
  'Intercept'  [45.97983716833132]
  ' 70'        [-8.58050531454973]
  ' 76'        [-3.89017396094922]
  ' 82'        [12.47067927549897]
  'Slope'      [-0.00780212907455]
  ' 70'        [ 0.00195840368824]
  ' 76'        [ 0.00113831038418]
  ' 82'        [-0.00309671407243]

Roughly speaking, the lines relating MPG to Weight have an intercept close to 45.98 and a slope close to -0.0078. Each group's coefficients are offset from these values somewhat. For instance, the intercept for the cars made in 1970 is 45.98-8.58 = 37.40.

Next, try a fit using parallel lines. (The ANOVA table shows that the parallel-lines fit is significantly worse than the separate-lines fit.)

[h,a,c,s] = aoctool(Weight,MPG,Model_Year,0.05,...
                    '','','','off','parallel lines');

c(:,1:2)

ans = 

  'Term'       'Estimate'
  'Intercept'  [43.38984085130596]
  ' 70'        [-3.27948192983761]
  ' 76'        [-1.35036234809006]
  ' 82'        [ 4.62984427792768]
  'Slope'      [-0.00664751826198]

Again, there are different intercepts for each group, but this time the slopes are constrained to be the same.

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