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plotDiagnostics

Class: GeneralizedLinearModel

Plot diagnostics of generalized linear regression model

Syntax

plotDiagnostics(mdl)
plotDiagnostics(mdl,plottype)
h = plotDiagnostics(...)
h = plotDiagnostics(mdl,plottype,Name,Value)

Description

plotDiagnostics(mdl) plots diagnostics from the mdl linear model using leverage as the plot type.

plotDiagnostics(mdl,plottype) plots diagnostics from the mdl generalized linear model in a plot of type plottype.

h = plotDiagnostics(...) returns handles to the lines in the plot.

h = plotDiagnostics(mdl,plottype,Name,Value) plots with additional options specified by one or more Name,Value pair arguments.

Input Arguments

mdl

Generalized linear model, as constructed by fitglm or stepwiseglm.

plottype

Character vector specifying the type of plot:

'contour'Residual vs. leverage with overlayed Cook's contours
'cookd'Cook's distance
'leverage'Leverage (diagonal of Hat matrix)

Default: 'leverage'

Name-Value Pair Arguments

Specify optional comma-separated pairs of Name,Value arguments. Name is the argument name and Value is the corresponding value. Name must appear inside single quotes (' '). You can specify several name and value pair arguments in any order as Name1,Value1,...,NameN,ValueN.

    Note:   The plot property name-value pairs apply to the first returned handle h(1).

'Color'

Color of the line or marker, a ColorSpec specification. For details, see linespec.

'LineStyle'

Type of line, a Chart Line Properties specification. For details, see linespec.

'LineWidth'

Width of the line or edges of filled area, in points, a positive scalar. One point is 1/72 inch.

Default: 0.5

'MarkerEdgeColor'

Color of the marker or edge color for filled markers, a ColorSpec specification. For details, see linespec.

'MarkerFaceColor'

Color of the marker face for filled markers, a ColorSpec specification. For details, see linespec.

'MarkerSize'

Size of the marker in points, a strictly positive scalar. One point is 1/72 inch.

Output Arguments

h

Vector of handles to lines or patches in the plot.

Examples

expand all

Create leverage and Cook's distance plots of a fitted generalized linear model.

Generate artificial data for the model, Poisson random numbers with two underlying predictors X(1) and X(2).

rng default % for reproducibility
rndvars = randn(100,2);
X = [2+rndvars(:,1),rndvars(:,2)];
mu = exp(1 + X*[1;2]);
y = poissrnd(mu);

Create a generalized linear regression model of Poisson data.

mdl = fitglm(X,y,'y ~ x1 + x2','distr','poisson');

Create a leverage plot.

plotDiagnostics(mdl)

Create a contour plot with Cook's distance.

plotDiagnostics(mdl,'contour')

Definitions

expand all

Tips

  • For many plots, the Data Cursor tool in the figure window displays the x and y values for any data point, along with the observation name or number.

References

[1] Neter, J., M. H. Kutner, C. J. Nachtsheim, and W. Wasserman. Applied Linear Statistical Models, Fourth Edition. Irwin, Chicago, 1996.

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