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Class Reference


BioIndexedFileAllow quick and efficient access to large text file with nonuniform-size entries
bioma.data.ExptDataContain data values from microarray experiment
bioma.data.MetaDataContain metadata from microarray experiment
bioma.data.MIAMEContain experiment information from microarray gene expression experiment
bioma.ExpressionSetContain data from microarray gene expression experiment
BioMapContain sequence, quality, alignment, and mapping data
BioReadContain sequence and quality data
GFFAnnotationRepresent General Feature Format (GFF) annotations
GTFAnnotationRepresent Gene Transfer Format (GTF) annotations
biograph objectData structure containing generic interconnected data used to implement directed graph
clustergram objectObject containing hierarchical clustering analysis data
DataMatrix objectData structure encapsulating data and metadata from microarray experiment so that it can be indexed by gene or probe identifiers and by sample identifiers
geneontData structure containing Gene Ontology (GO) information
HeatMap objectObject containing matrix and heat map display properties
phytree objectData structure containing phylogenetic tree
termData structure containing information about Gene Ontology (GO) term
  


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