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R2011b Documentation → Bioinformatics Toolbox
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Contents

Index

• Getting Started

• User's Guide

• Constructor

• Data Formats and Databases

• Data Visualization

• Trace Tools

• Sequence Conversion

• Sequence Utilities

• Sequence Statistics

• Sequence Visualization

• Pairwise Sequence Alignment

• Multiple Sequence Alignment

• Scoring Matrices

• Phylogenetic Tree Tools

• Phylogenetic Tree Methods

• Graph Theory

• Graph Visualization Methods

• Gene Ontology

• Gene Ontology Methods

• Protein Analysis

• Profile Hidden Markov Models

• Microarray File Formats

• Microarray Utilities

• Microarray Data Analysis and Visualization

• Microarray Normalization and Filtering

• BioIndexedFile Methods

• BioRead Methods

• BioMap Methods

• GFFAnnotation Methods

• GTFAnnotation Methods

• HeatMap Methods

• Clustergram Methods

• ExpressionSet Methods

• ExptData Methods

• DataMatrix Methods

• MetaData Methods

• MIAME Methods

• Statistical Learning

• Mass Spectrometry

• Bioanalytics

• Release Notes

dayhoff - Return Dayhoff scoring matrix

Syntax

ScoringMatrix = dayhoff

Description

ScoringMatrix = dayhoff returns a PAM250 type scoring matrix. The order of amino acids in the matrix is A R N D C Q E G H I L K M F P S T W Y V B Z X *.

See Also

blosum | gonnet | localalign | nuc44 | nwalign | pam | swalign

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