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R2011b Documentation → Bioinformatics Toolbox
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Contents

Index

• Getting Started

• User's Guide

• Constructor

• Data Formats and Databases

• Data Visualization

• Trace Tools

• Sequence Conversion

• Sequence Utilities

• Sequence Statistics

• Sequence Visualization

• Pairwise Sequence Alignment

• Multiple Sequence Alignment

• Scoring Matrices

• Phylogenetic Tree Tools

• Phylogenetic Tree Methods

• Graph Theory

• Graph Visualization Methods

• Gene Ontology

• Gene Ontology Methods

• Protein Analysis

• Profile Hidden Markov Models

• Microarray File Formats

• Microarray Utilities

• Microarray Data Analysis and Visualization

• Microarray Normalization and Filtering

• BioIndexedFile Methods

• BioRead Methods

• BioMap Methods

• GFFAnnotation Methods

• GTFAnnotation Methods

• HeatMap Methods

• Clustergram Methods

• ExpressionSet Methods

• ExptData Methods

• DataMatrix Methods

• MetaData Methods

• MIAME Methods

• Statistical Learning

• Mass Spectrometry

• Bioanalytics

• Release Notes

dna2rna - Convert DNA sequence to RNA sequence

Syntax

SeqRNA = dna2rna(SeqDNA)

Arguments

SeqDNA

DNA sequence specified by any of the following:

Character string with the characters A, C, G, T, and ambiguous characters R, Y, K, M, S, W, B, D, H, V, N,
Row vector of integers from the table Mapping Nucleotide Integers to Letter Codes.
MATLAB structure containing a Sequence field that contains a DNA sequence, such as returned by fastaread, fastqread, emblread, getembl, genbankread, or getgenbank.

Description

SeqRNA = dna2rna(SeqDNA) converts a DNA sequence to an RNA sequence by converting any thymine nucleotides (T) in the DNA sequence to uracil nucleotides (U). The RNA sequence is returned in the same format as the DNA sequence. For example, if SeqDNA is a vector of integers, then so is SeqRNA.

Examples

Convert a DNA sequence to an RNA sequence.

rna = dna2rna('ACGATGAGTCATGCTT')

rna =
ACGAUGAGUCAUGCUU

See Also

regexp | rna2dna | strrep

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