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R2012a Documentation → Bioinformatics Toolbox
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Contents

Index

• Getting Started

• User's Guide

• Constructor

• Data Formats and Databases

• Data Visualization

• Trace Tools

• Sequence Conversion

• Sequence Utilities

• Sequence Statistics

• Sequence Visualization

• Pairwise Sequence Alignment

• Multiple Sequence Alignment

• Scoring Matrices

• Phylogenetic Tree Tools

• Phylogenetic Tree Methods

• Graph Theory

• Graph Visualization Methods

• Gene Ontology

• Gene Ontology Methods

• Protein Analysis

• Profile Hidden Markov Models

• Microarray File Formats

• Microarray Utilities

• Microarray Data Analysis and Visualization

• Microarray Normalization and Filtering

• BioIndexedFile Methods

• BioRead Methods

• BioMap Methods

• GFFAnnotation Methods

• GTFAnnotation Methods

• HeatMap Methods

• Clustergram Methods

• ExpressionSet Methods

• ExptData Methods

• DataMatrix Methods

• MetaData Methods

• MIAME Methods

• Statistical Learning

• Mass Spectrometry

• Bioanalytics

• Release Notes

isdag (biograph) - Test for cycles in biograph object

Syntax

isdag(BGObj)

Arguments

BGObj Biograph object created by biograph (object constructor).

Description

Tip For introductory information on graph theory functions, see Graph Theory Functions in the Bioinformatics Toolbox User's Guide.

isdag(BGObj) returns logical 1 (true) if an N-by-N adjacency matrix extracted from a biograph object, BGObj, is a directed acyclic graph (DAG) and logical 0 (false) otherwise. In the N-by-N sparse matrix, all nonzero entries indicate the presence of an edge.

References

[1] Siek, J.G., Lee, L-Q, and Lumsdaine, A. (2002). The Boost Graph Library User Guide and Reference Manual, (Upper Saddle River, NJ:Pearson Education).

See Also

allshortestpaths | biograph | conncomp | graphisdag | isomorphism | isspantree | maxflow | minspantree | shortestpath | topoorder | traverse

How To

biograph object

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