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R2012a Documentation → Bioinformatics Toolbox
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Contents

Index

• Getting Started

Required Software

Optional Software

Data Formats and Databases

Sequence Alignments

Sequence Utilities and Statistics

Protein Property Analysis

Phylogenetic Analysis

Microarray Data Analysis

Microarray Data Storage

Mass Spectrometry Data Analysis

Graph Theory Functions

Graph Visualization

Statistical Learning and Visualization

Prototyping and Development Environment

Data Visualization

Algorithm Sharing and Application Deployment

Using Excel and MATLAB Together

About the Example

Before Running the Example

Running the Example for the Entire Data Set

Editing Formulas to Run the Example on a Subset of the Data

Using the Spreadsheet Link EX Interface to Interact With the Data in MATLAB

What Are get Functions?

Creating the getpubmed Function

Understanding Support Vector Machines

Using Support Vector Machines

Example: Nonlinear Classifier with Gaussian Kernel

Example: SVM Classification with Cross Validation

• User's Guide

• High-Throughput Sequence Analysis

• Sequence Analysis

• Microarray Analysis

• Phylogenetic Analysis

Overview of Phylogenetic Analysis

• Example: Building a Phylogenetic Tree

Overview of the Primate Example

Searching NCBI for Phylogenetic Data

Creating a Phylogenetic Tree for Five Species

Creating a Phylogenetic Tree for Twelve Species

Exploring the Phylogenetic Tree

• Phylogenetic Tree Tool Reference

Overview of the Phylogenetic Tree Tool

Opening the Phylogenetic Tree Tool

• Release Notes

Phylogenetic Analysis

Exploring Gene Expression Data

Exploring Gene Expression Data

Overview of Phylogenetic Analysis

Overview of Phylogenetic Analysis

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