Examples

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Use this list to find examples in the documentation.

Introduction

Importing and Exploring Bioinformatic Data from Microsoft Excel
Creating get Functions
Extracting Information from Large Multi-Entry Text Files

Sequence Analysis

Storing and Managing Short-Read Sequence Data in Objects
Reading, Analyzing, and Converting a Nucleotide Sequence Using the Command Line
Sequence Alignment

High-Throughput Sequencing

Identifying Differentially Expressed Genes from RNA-Seq Data
Exploring Protein-DNA Binding Sites from Paired-End ChIP-Seq Data

Microarray Analysis

Storing and Managing Gene Expression Data in Objects
Representing Expression Data Values in DataMatrix Objects
Representing Expression Data Values in ExptData Objects
Representing Sample and Feature Metadata in MetaData Objects
Representing Experiment Information in a MIAME Object
Visualizing Microarray Images
Analyzing Gene Expression Profiles
Detecting DNA Copy Number Alteration in Array-Based CGH Data
Exploring Gene Expression Data

Phylogenetic Analysis

Building a Phylogenetic Tree

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