Skip to Main Content Skip to Search
Product Documentation

Function Reference


Modeling, Simulation, and Analysis ToolsModeling, simulation, and analysis tools
Project Opening and SavingSave and open projects in MATLAB
SBML Model Reading and WritingExport and import SBML models
Object ConstructionCreate SimBiology objects
Pharmacokinetic ModelingTools for pharmacokinetic modeling
Units and Unit PrefixesPerform unit conversion and create user-defined units

Modeling, Simulation, and Analysis Tools

sbioacceleratePrepare model object for accelerated simulations
sbioconsmoietyFind conserved moieties in SimBiology model
sbiodesktopOpen SimBiology desktop for modeling and simulation
sbioensembleplotShow results of ensemble run using 2-D or 3-D plots
sbioensemblerunMultiple stochastic ensemble runs of SimBiology model
sbioensemblestatsGet statistics from ensemble run data
sbiofittoolOpen SimBiology desktop for population fitting
sbiogetmodelGet model object that generated simulation data
sbiohelpHelp for SimBiology functions
sbiolasterrorSimBiology last error message
sbiolastwarningSimBiology last warning message
sbionlinfitPerform nonlinear least-squares regression using SimBiology models
sbionlmefitEstimate nonlinear mixed effects using SimBiology models
sbionlmefitsaEstimate nonlinear mixed effects with stochastic EM algorithm
sbioparamestimPerform parameter estimation
sbioplotPlot simulation results in one figure
sbioresetDelete all model objects
sbioselectSearch for objects with specified constraints
sbiosimulateSimulate model object
sbiosubplotPlot simulation results in subplots
sbiotrellisPlot data or simulation results in trellis plot
simbiologyOpen SimBiology desktop for modeling and simulation

Project Opening and Saving

sbioaddtolibraryAdd to user-defined library
sbiocopylibraryCopy library to disk
sbioloadprojectLoad project from file
sbioremovefromlibrary Remove kinetic law, unit, or unit prefix from library
sbiosaveprojectSave all models in root object
sbiowhosShow contents of project file, library file, or SimBiology root object

SBML Model Reading and Writing

sbmlexportExport SimBiology model to SBML file
sbmlimportImport SBML-formatted file

Object Construction

sbioabstractkineticlawCreate kinetic law definition
sbiodoseConstruct dose object
sbiomodelConstruct model object
sbiorootReturn SimBiology root object
sbiovariantConstruct variant object

Pharmacokinetic Modeling

sbiofitstatusplotPlot status of sbionlmefit or sbionlmefitsa
sbionlinfitPerform nonlinear least-squares regression using SimBiology models
sbionlmefitEstimate nonlinear mixed effects using SimBiology models
sbionlmefitsaEstimate nonlinear mixed effects with stochastic EM algorithm
sbionmfiledefNONMEM file definition object for sbionmimport
sbionmimportImport NONMEM formatted data

Units and Unit Prefixes

sbioconvertunitsConvert unit and unit value to new unit
sbioshowunitprefixesShow unit prefixes in library
sbioshowunitsShow units in library
sbiounitCreate user-defined unit
sbiounitcalculatorConvert value between units
sbiounitprefixCreate user-defined unit prefix
  


Free Computational Biology Interactive Kit

See how to analyze, visualize, and model biological data and systems using MathWorks products.

Get free kit

Trials Available

Try the latest computational biology products.

Get trial software
 © 1984-2012- The MathWorks, Inc.    -   Site Help   -   Patents   -   Trademarks   -   Privacy Policy   -   Preventing Piracy   -   RSS