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| R2012a Documentation → SimBiology | |
Learn more about SimBiology |
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| Contents | Index |
The SimBiology model object represents a model, which is a collection of interrelated reactions and rules that transform, transport, and bind species. The model includes model components such as compartments, reactions, parameters, rules, and events. Each of the components is represented as a property of the model object. A model object also has a default configuration set object to define simulation settings. You can also add more configuration set objects to a model object.
See Property Summary for links to model property reference pages.
Properties define the characteristics of an object. Use the get and set commands to list object properties and change their values at the command line. You can graphically change object properties in the SimBiology desktop.
You can retrieve SimBiology model objects from the SimBiology root object. A SimBiology model object has its Parent property set to the SimBiology root object. The root object contains a list of model objects that are accessible from the MATLAB command line and from the SimBiology desktop. Because both the command line and the desktop point to the same model object in the Root object, any changes you make to the model at the command line are reflected in the desktop, and vice versa.
| sbiomodel | Construct model object |
| addcompartment (model, compartment) | Create compartment object |
| addconfigset (model) | Create configuration set object and add to model object |
| adddose (model) | Add dose object to model |
| addevent (model) | Add event object to model object |
| addparameter (model, kineticlaw) | Create parameter object and add to model or kinetic law object |
| addreaction (model) | Create reaction object and add to model object |
| addrule (model) | Create rule object and add to model object |
| addspecies (model, compartment) | Create species object and add to compartment object within model object |
| addvariant (model) | Add variant to model |
| copyobj (any object) | Copy SimBiology object and its children |
| delete (any object) | Delete SimBiology object |
| display (any object) | Display summary of SimBiology object |
| get (any object) | Get object properties |
| getadjacencymatrix (model) | Get adjacency matrix from model object |
| getconfigset (model) | Get configuration set object from model object |
| getdose (model) | Return SimBiology dose object |
| getstoichmatrix (model) | Get stoichiometry matrix from model object |
| getvariant (model) | Get variant from model |
| removeconfigset (model) | Remove configuration set from model |
| removedose (model) | Add dose object to model |
| removevariant (model) | Remove variant from model |
| reorder (model, compartment) | Reorder component lists |
| set (any object) | Set object properties |
| setactiveconfigset (model) | Set active configuration set for model object |
| verify (model, variant) | Validate and verify SimBiology model |
| Compartments | Array of compartments in model or compartment |
| Events | Contain all event objects |
| Name | Specify name of object |
| Notes | HTML text describing SimBiology object |
| Parameters | Array of parameter objects |
| Parent | Indicate parent object |
| Reactions | Array of reaction objects |
| Rules | Array of rules in model object |
| Tag | Specify label for SimBiology object |
| Type | Display SimBiology object type |
| UserData | Specify data to associate with object |
AbstractKineticLaw object, Configset object, KineticLaw object, Parameter object, Reaction object, Root object, Rule object, Species object
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