SpeciesOutputs - Specify species outputs for sensitivity analysis

Note   SpeciesOutputs has been removed. Use Outputs instead.

Description

The SpeciesOutputs property allows you to specify the species for which you want to compute sensitivities. SpeciesOutputs is a property of the SensitivityAnalysisOptions object. SenstivityAnalysisOptions is a property of the configuration set object.

The SimBiology software calculates sensitivities with respect to the values of the parameters specified in ParameterInputFactors and the initial amounts of the species specified in SpeciesInputFactors. When you simulate a model with SensitivityAnalysis enabled in the active configuration set object, sensitivity analysis returns the computed sensitivities of the species specified in SpeciesOutputs. For a description of the output, see the SensitivityAnalysisOptions property description.

Characteristics

Applies to	Object: SensitivityAnalysisOptions
Data type	Species object or array of species objects
Data values	Species object array. Default is [] (empty).
Access	Read/write

Examples

This example shows how to set SpeciesOutputs for sensitivity analysis.

1. Import the radio decay model from the SimBiology demos.

   modelObj  = sbmlimport('radiodecay');

2. Retrieve the configuration set object from modelObj.

   configsetObj = getconfigset(modelObj);

3. Add a species to the SpeciesOutputs property and display. Use the sbioselect function to retrieve the species object from the model.

   set(configsetObj.SensitivityAnalysisOptions,'SpeciesOutputs', sbioselect(modelObj, 'Type', 'species', 'Name', 'z'));
   get (configsetObj.SensitivityAnalysisOptions, 'SpeciesOutputs')

   SimBiology Species Array
   
   Index:  Compartment:  Name:  InitialAmount: InitialAmountUnits:
     1       unnamed      z        0              molecule

See Also

ParameterInputFactors, sbioselect, SensitivityAnalysis, SensitivityAnalysisOptions, SpeciesInputFactors

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