The Wavelet Toolbox™ provides a number of functions for the estimation of an unknown function (signal or image) in noise. You can use these functions to denoise signals and as a method for nonparametric function estimation.
The most general 1-D model for this is
s(n) = f(n) + σe(n)
where n = 0,1,2,...N-1. The e(n) are Gaussian random variables distributed as N(0,1). The variance of the σe(n) is σ2.
In practice, s(n) is often a discrete-time signal with equal time steps corrupted by additive noise and you are attempting to recover that signal.
More generally, you can view s(n) as an N-dimensional random vector
In this general context, the relationship between denoising and regression is clear.
You can replace the N-by-1 random vector by N-by-M random matrices to obtain the problem of recovering an image corrupted by additive noise.
You can obtain a 1-D example of this model with the following code.
load cuspamax; y = cuspamax+0.5*randn(size(cuspamax)); plot(y); hold on; plot(cuspamax,'r','linewidth',2); axis tight; legend('f(n)+\sigma e(n)','f(n)', 'Location', 'NorthWest');
For a broad class of functions (signals, images) that possess certain smoothness properties, wavelet techniques are optimal or near optimal for function recovery.
Specifically, the method is efficient for families of functions f that have only a few nonzero wavelet coefficients. These functions have a sparse wavelet representation. For example, a smooth function almost everywhere, with only a few abrupt changes, has such a property.
The general wavelet–based method for denoising and nonparametric function estimation is to transform the data into the wavelet domain, threshold the wavelet coefficients, and invert the transform.
You can summarize these steps as:
Choose a wavelet and a level N. Compute the wavelet decomposition of the signal s down to level N.
Threshold detail coefficients
For each level from 1 to N, threshold the detail coefficients.
Compute wavelet reconstruction using the original approximation coefficients of level N and the modified detail coefficients of levels from 1 to N.
Toolbox supports a number of threshold selection
rules. Four threshold selection rules are implemented in the
thselect. Each rule corresponds to a
in the command
thr = thselect(y,tptr)
which returns the threshold value.
Threshold Selection Rule
Selection using principle of Stein's Unbiased Risk Estimate (SURE)
Fixed form (universal) threshold equal to
with N the length of the signal.
Selection using a mixture of the first two options
'rigrsure' uses for the
soft threshold estimator a threshold selection rule based on Stein's
Unbiased Estimate of Risk (quadratic loss function). You get an estimate
of the risk for a particular threshold value t.
Minimizing the risks in t gives a selection of
the threshold value.
'heursure' is a mixture
of the two previous options. As a result, if the signal-to-noise ratio
is very small, the SURE estimate is very noisy. So if
such a situation is detected, the fixed form threshold is used.
'minimaxi' uses a fixed
threshold chosen to yield minimax performance
for mean square error against an ideal procedure. The minimax principle
is used in statistics to design estimators. Since the denoised signal
can be assimilated to the estimator of the unknown regression function,
the minimax estimator is the option that realizes the minimum, over
a given set of functions, of the maximum mean square error.
The following example shows the threshold rules for a 1000-by-1 N(0,1) vector. The signal here is
rng default; sig = randn(1e3,1); thr_rigrsure = thselect(sig,'rigrsure') thr_univthresh = thselect(sig,'sqtwolog') thr_heursure = thselect(sig,'heursure') thr_minimaxi = thselect(sig,'minimaxi') histogram(sig); h = findobj(gca,'Type','patch'); set(h,'FaceColor',[0.7 0.7 0.7],'EdgeColor','w'); hold on; plot([thr_rigrsure thr_rigrsure], [0 300],'linewidth',2); plot([thr_univthresh thr_univthresh], [0 300],'r','linewidth',2); plot([thr_minimaxi thr_minimaxi], [0 300],'k','linewidth',2); plot([-thr_rigrsure -thr_rigrsure], [0 300],'linewidth',2); plot([-thr_univthresh -thr_univthresh], [0 300],'r','linewidth',2); plot([-thr_minimaxi -thr_minimaxi], [0 300],'k','linewidth',2);
For Stein's Unbiased Risk Estimate (SURE) and minimax thresholds, approximately 3% of coefficients are retained. In the case of the universal threshold, all values are rejected.
We know that the detail coefficients vector is the superposition of the coefficients of f and the coefficients of e, and that the decomposition of e leads to detail coefficients, which are standard Gaussian white noises.
After you use
determine a threshold, you can threshold each level of a . This second
step can be done using
wthcoef, directly handling
the wavelet decomposition structure of the original signal s.
Hard and soft thresholding are examples of shrinkage rules. After you have determined your threshold, you have to decide how to apply that threshold to your data.
The simplest scheme is hard thresholding. Let T denote the threshold and x your data. The hard thresholding is
The soft thresholding is
You can apply your threshold using the hard or soft rule with
y = linspace(-1,1,100); thr = 0.4; ythard = wthresh(y,'h',thr); ytsoft = wthresh(y,'s',thr); subplot(131); plot(y); title('Original Data'); subplot(132); plot(ythard,'*'); title('Hard Thresholding'); subplot(133); plot(ytsoft,'*'); title('Soft Thresholding');
Usually in practice the basic model cannot be used directly.
We examine here the options available to deal with model deviations
in the main denoising function
The simplest use of
sd = wden(s,tptr,sorh,scal,n,wav)
which returns the denoised version
the original signal
s obtained using the
selection rule. Other parameters needed are
wav. The parameter
the thresholding of details coefficients of the decomposition at level
the wavelet called
wav. The remaining parameter
to be specified. It corresponds to threshold's rescaling methods.
Basic model with unscaled noise
Basic model with nonwhite noise
scal = 'one' corresponds
to the basic model.
In general, you can ignore the noise level and it must be estimated. The detail coefficients cD1 (the finest scale) are essentially noise coefficients with standard deviation equal to σ. The median absolute deviation of the coefficients is a robust estimate of σ. The use of a robust estimate is crucial for two reasons. The first one is that if level 1 coefficients contain f details, then these details are concentrated in a few coefficients if the function f is sufficiently regular. The second reason is to avoid signal end effects, which are pure artifacts due to computations on the edges.
scal = 'sln' handles threshold rescaling
using a single estimation of level noise based on the first-level
When you suspect a nonwhite noise e, thresholds must be rescaled by a level-dependent estimation of the level noise. The same kind of strategy as in the previous option is used by estimating σlev level by level.
This estimation is implemented in the file
directly handling the wavelet decomposition structure of the original
scal = 'mln' handles threshold rescaling
using a level-dependent estimation of the level noise.
For a more general procedure, the
performs wavelet coefficients thresholding for both denoising and
compression purposes, while directly handling 1-D and 2-D data. It
allows you to define your own thresholding strategy selecting in
xd = wdencmp(opt,x,wav,n,thr,sorh,keepapp);
opt = 'gbl' and
a positive real number for uniform threshold.
opt = 'lvd' and
a vector for level dependent threshold.
keepapp = 1 to keep approximation
coefficients, as previously and
keepapp = 0 to allow approximation
x is the signal to be denoised
the same as above.
We begin with examples of 1-D denoising methods with the first
example credited to Donoho and Johnstone. You can use the following
file to get the first test function using
% Set signal to noise ratio and set rand seed. sqrt_snr = 4; init = 2055615866; % Generate original signal xref and a noisy version x adding % a standard Gaussian white noise. [xref,x] = wnoise(1,11,sqrt_snr,init); % Denoise noisy signal using soft heuristic SURE thresholding % and scaled noise option, on detail coefficients obtained % from the decomposition of x, at level 3 by sym8 wavelet. xd = wden(x,'heursure','s','one',3,'sym8');
Blocks Signal Denoising
Since only a small number of large coefficients characterize the original signal, the method performs very well.
As a second example, let us try the method on the highly perturbed part of the electrical signal studied above.
According to this previous analysis, let us use
and decompose at level 3.
To deal with the composite noise nature, let us try a level-dependent noise size estimation.
% Load electrical signal and select part of it. load leleccum; indx = 2000:3450; x = leleccum(indx); % Find first value in order to avoid edge effects. deb = x(1); % Denoise signal using soft fixed form thresholding % and unknown noise option. xd = wden(x-deb,'sqtwolog','s','mln',3,'db3')+deb;
Electrical Signal Denoising
The result is quite good in spite of the time heterogeneity of the nature of the noise after and before the beginning of the sensor failure around time 2450.
s(i,j) = f(i,j) + σe(i,j)
where e is a white Gaussian noise with unit variance.
The 2-D denoising procedure has the same three steps and uses
2-D wavelet tools instead of 1-D ones. For the threshold selection,
used instead of
length(s) if the fixed form threshold
Note that except for the “automatic” 1-D denoising
case, denoising and compression are performed using
As an example, you can use the following file illustrating the denoising
of a real image.
% Load original image. load woman % Generate noisy image. x = X + 15*randn(size(X)); % Find default values. In this case fixed form threshold % is used with estimation of level noise, thresholding % mode is soft and the approximation coefficients are % kept. [thr,sorh,keepapp] = ddencmp('den','wv',x); % thr is equal to estimated_sigma*sqrt(log(prod(size(X)))) % Denoise image using global thresholding option. xd = wdencmp('gbl',x,'sym4',2,thr,sorh,keepapp); % Plots. colormap(pink(255)), sm = size(map,1); subplot(221), image(wcodemat(X,sm)), title('Original Image') subplot(222), image(wcodemat(x,sm)), title('Noisy Image') subplot(223), image(wcodemat(xd,sm)), title('denoised Image')
The result shown below is acceptable.
The idea is to define level by level time-dependent thresholds, and then increase the capability of the denoising strategies to handle nonstationary variance noise models.
More precisely, the model assumes (as previously) that the observation is equal to the interesting signal superimposed on a noise (see Wavelet Denoising and Nonparametric Function Estimation).
s(n) = f(n) + σe(n)
But the noise variance can vary with time. There are several different variance values on several time intervals. The values as well as the intervals are unknown.
Let us focus on the problem of estimating the change points or equivalently the intervals. The algorithm used is based on an original work of Marc Lavielle about detection of change points using dynamic programming (see [Lav99] in References).
Let us generate a signal from a fixed-design regression model with two noise variance change points located at positions 200 and 600.
% Generate blocks test signal. x = wnoise(1,10); % Generate noisy blocks with change points. bb = randn(1,length(x)); cp1 = 200; cp2 = 600; x = x + [bb(1:cp1),bb(cp1+1:cp2)/4,bb(cp2+1:end)];
The aim of this example is to recover the two change points
from the signal
x. In addition, this example illustrates
how the Wavelet Analyzer app tools locate the change points for interval
Step 1. Recover a noisy signal by suppressing an approximation.
% Perform a single-level wavelet decomposition % of the signal using db3. wname = 'db3'; lev = 1; [c,l] = wavedec(x,lev,wname); % Reconstruct detail at level 1. det = wrcoef('d',c,l,wname,1);
The reconstructed detail at level 1 recovered at this stage is almost signal free. It captures the main features of the noise from a change points detection viewpoint if the interesting part of the signal has a sparse wavelet representation. To remove almost all the signal, we replace the biggest values by the mean.
Step 2. To remove almost all the signal, replace 2% of biggest values by the mean.
x = sort(abs(det)); v2p100 = x(fix(length(x)*0.98)); ind = find(abs(det)>v2p100); det(ind) = mean(det);
Step 3. Use the
wvarchg function to estimate the change
points with the following parameters:
The minimum delay between two change points is d = 10.
The maximum number of change points is 5.
[cp_est,kopt,t_est] = wvarchg(det,5)
Two change points and three intervals are proposed. Since the three interval variances for the noise are very different the optimization program detects easily the correct structure.
The estimated change points are close to the true change points: 200 and 600.
Step 4. (Optional) Replace the estimated change points.
i-1 instants of the variance change points,
kopt is the proposed number of change
cp_est = t_est(kopt+1,1:kopt);
You can replace the estimated change points by computing
% cp_New = t_est(knew+1,1:knew); % where 1 ≤ knew ≤ 5
The following measurements and settings are useful for analyzing wavelet signals and images:
M S E — Mean square error (MSE) is the squared norm of the difference between the data and the signal or image approximation divided by the number of elements.
Max Error — Maximum absolute squared deviation in the signal or image approximation.
L2-Norm Ratio — Ratio of the squared L2-norm of the signal or image approximation to the input signal or image. For images, the image is reshaped as a column vector before taking the L2-norm
P S N R — Peak signal-to-noise ratio (PSNR) in decibels. PSNR is meaningful only for data encoded in terms of bits per sample or bits per pixel.
B P P — Bits per pixel ratio (BPP), which is the compression ratio (Comp. Ratio) multiplied by 8, assuming one byte per pixel (8 bits).
Comp Ratio — Compression ratio, which is the number of elements in the compressed image divided by the number of elements in the original image expressed as a percentage.