Percentage Difference of Values stored in Two Matrices

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I have two 40X1 matrices with values in for which I wish to calculate the percentage difference ie. the difference between the first two values, second two values in each etc.
temperature = matrix 1 analtemp = matrix 2
When trying to do a straight forward percentage difference calculation the variable is displayed as a 40X40 matrix with nothing in it:
PDif=100*((temperature-analtemp)/analtemp);
However, it will allow me to calculate the difference (not percentage) between the two as follows:
Dif=temperature-analtemp;
I cannot understand why this is occurring. Is anyone able to offer some assistance?
Thanks

Accepted Answer

Azzi Abdelmalek
Azzi Abdelmalek on 4 Dec 2014
PDif=100*(temperature-analtemp)./analtemp;
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