Fix parameters using fit function
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Hi all,
This may be a dumb and easy question, but I'm having problems in understanding how to fix parametersin a multiparameter fit function. Going straight to the problem, i have a function which fits a 2D user inputted gaussian as follows:
function [gof,fittato] = fit_gaub(image,error,init)
a = init(1);
b = init(2);
c1 = init(3);
c2 = init(4);
t1 = init(5);
w1 = init(6);
w2 = init(7);
gaub = @(a,b,c1,c2,t1,w1,w2,x,y) a + b.*exp(-(((x-c1).*cosd(t1)+(y-c2).*sind(t1))/w1).^2-((-(x-c1).*sind(t1)+(y-c2).*cosd(t1))/w2).^2)./(pi.*w1.*w2);
lunghezza = numel(image);
z_vect = zeros(lunghezza,1);
k = 1;
for i=1:size(image,2)
for j=1:size(image,1)
r_fit(k) = j;
c_fit(k) = i;
z_vect(k) = image(j,i);
k = k+1;
end
end
weight(1:lunghezza)=error;
% a,b,c1,c2,t1,w1,w2
[fittato, gof] = fit([r_fit', c_fit'], z_vect,gaub,'Robust', 'Bisquare','Algorithm','Trust-Region','weights',weight...
,'StartPoint', init ...
,'Lower', [ -10 0 0 0 0 1 1 ]...
,'Upper', [ 100 10e12 200 50 15 100 100]);
In the framework of this function, how can I tell matlab to fix a parameter without playing with the contranints? I've found something about it only concerning the
lsqcurvefit
function, but I have no idea neither on how to use that function, nor what changes may that bring to my code(get same output from my function).
any help would be much appreciated,
Andrea Calvi
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Accepted Answer
jgg
on 17 Dec 2015
Edited: jgg
on 17 Dec 2015
I think I understand what you're trying to do. Your function is this thing:
gaub = @(a,b,c1,c2,t1,w1,w2,x,y) ...%bunch of function stuff
What you'd like to do is, say, fix b to be a particular value, say b = 3 then optimize your function, but you don't want to do this by saying 3< = b <= 3 in the constraints.
The simplest solution is to just refine your function and constaints:
b = 3;
gaub2 = @(a,c1,c2,t1,w1,w2,x,y) gaub(a,b,c1,c2,t1,w1,w2,x,y);
%now gaub2 is gaub, with b fixed at the value set.
Now, you just need to get rid of the b constraint, so in your optimization, set:
'Lower', [ -10 0 0 0 1 1 ]...
'Upper', [ 100 200 50 15 100 100]
by omitting the column of constraints associated with b. You can fiddle with this to be a little more robust, but I think this is the most straightforward way. (For example, to do it for all of your variables, you can set up a switch statement and have seven possible functions).
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More Answers (2)
gabodabo
on 19 May 2019
Edited: gabodabo
on 19 May 2019
I am nearly 4y late for the discussion, but a very simple way of fixing parameters in the 'fit' function is to put your value in the upper and lower limits. For example, for a fit to a function with four parameters, of which two are fixed:
opts.Lower = [ param1_fix param2_fix -Inf -Inf ];
opts.Upper = [ param1_fix param2_fix Inf Inf ];
[fitresult, gof] = fit( xData, yData, myfunc, opts);
Hope this helps!
Gabriel
0 Comments
Andrea Calvi
on 18 Dec 2015
4 Comments
jgg
on 21 Dec 2015
I don't think so; it's okay though. People should read through if they want to automate it, so it's all good.
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