How to suspend/interrupt from Java the execution of a Builder JA application?

Hello Everybody,

I built some MATLAB functions and I employed the MATLAB Builder JA for embedding this MATLAB functions into a Java library. My Java library presents only one public class, let's call it MyClass, which has only one method, let's say myMethod.

I would like to include myMethod in a GUI, and to give to the user the possibility of suspending/interrupting myMethod from the GUI; the execution of myMethod may require a long time, so the user may be willing of interrupting it.

However, I found no way to stop the execution of the MCR program called from myMethod. I tried to call myMethod within a Java Thread:

public Class MyThread extends Thread{

    //other code

    public void run(){
      MyClass myObject = new MyClass();
      myObject.myMethod();
    }

    //other code

}

However, if I try to interrupt a MyThread istance, the istance of MyThread is interrupted (as confirmed by the isInterrupted() method), but the MCR program will continue to run (and to consume resources):

//other code

MyThread myThread = new MyThread();
myThread.start();
//...
if (someConditionIsTrue){
//this will interrupt the Java Thread, NOT the underlying MCR application
myThread.interrupt();
}

//other code

I have been looking for a long time for an answer to this problem; the only similar topic I found is the following:

http://www.mathworks.com/matlabcentral/newsreader/view_thread/262606

However, this solution does not work in my case.

Does anybody has any experience/idea about this topic?

Best Regards,

Vincenzo