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Mex compilation with header files

Asked by Sumeet on 15 Jan 2013

Hi,

I'm running Matlab on Ubuntu 12.04. I have written a C++ function simulation.cpp using the mex format. I've defined some of my functions in a separate header file that is located in the same directory as simulation.cpp. I read on the web that to compile a .cpp file with header files, I need to use -l and provide the path of the header files. When I run the following:

mex -l"/media/.../folder_containing_header_files" simulation.cpp

I get the following error

/usr/bin/ld: cannot find -l/media/.../folder_containing_header_files/
collect2: ld returned 1 exit status
mex: link of ' "simulation.mexglx"' failed.

Incidentally, all my header files are located in the same directory as simulation.cpp, which is also my working directory in matlab.

Does anybody know what the problem is?

Thanks!

0 Comments

Sumeet

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5 Answers

Answer by Walter Roberson on 15 Jan 2013

You used the "-l" (lower-case L) option; you need to use "-I" (upper-case I). "I" for "include".

Also you might need to use a space between the option and its value.

1 Comment

Sumeet on 15 Jan 2013

Thanks again Walter. Yes, -I (I for include) was the problem. However, now it cannot find mex.h. Where is it located and how do I specify its location to matlab?

>> mex -I "./" simulation.cpp
Warning: You are using gcc version "4.6.3-1ubuntu5)".  The version
         currently supported with MEX is "4.4.6".
         For a list of currently supported compilers see: 
         http://www.mathworks.com/support/compilers/current_release/
simulation.cpp:2:17: fatal error: mex.h: No such file or directory
compilation terminated.
      mex: compile of ' "simulation.cpp"' failed.
Error using mex (line 206)
Unable to complete successfully.
Walter Roberson
Answer by James Tursa on 15 Jan 2013

If your current directly is the directory that contains simulation.cpp and its associated header files, doesn't simply "mex simulation.cpp" work at the command line?

3 Comments

Walter Roberson on 15 Jan 2013

Possibly yes.

#include "HeaderFile.hpp"

would look in the current directory, but

#include <HeaderFile.hpp>

would not look in the current directory, in which case the -I option would be needed.

Sumeet on 15 Jan 2013

Thanks James and Walter. I tried both `<HeaderFile.hpp> and "HeaderFile.hpp". It didn't help.

Walter Roberson on 15 Jan 2013

Are you still using -l (lower-case L)? I'm sure it should be -I (upper-case I)

James Tursa
Answer by James Tursa on 15 Jan 2013
Edited by James Tursa on 15 Jan 2013

Have you tried the function form of mex yet? I.e., something like

mex('-I','...whatever...','simulation.cpp')

Also, what do your include lines in the actual source code look like?

7 Comments

Sumeet on 16 Jan 2013

The problem occurs even before I add the header file. When I do mex gateway.c, it compiles without error, but when I do mex -I "./" gateway.c, it complains of a missing mex.h file. So one guess is that it is trying to search for mex.h within my current directory. How do I tell matlab to not restrict its search to my directory, but add my directory to the list it already searches?

James Tursa on 17 Jan 2013

Frankly, I don't know for sure since I don't personally use any of these library/include/directory options myself. Things like having spaces in directory names etc tend to complicate things, so I avoid these options entirely. But I have never had a problem with the following approach:

- Have all the source and header files in one directory
- Make that directory the current directory
- Use simple #include "filename.h" syntax in source files
- Use filenames without directory info on the mex command line

Does this approach work for you?

Walter Roberson on 17 Jan 2013

If you were to try

mex -v gateway.c

then along the way it would probably indicate which directories it is -I'ing; you could then -I those directories for your actual code.

James Tursa
Answer by Ryan Livingston on 17 Jan 2013

There should be no space between the switch and the directory. So can you try:

 mex -I./ gateway.c

rather than

 mex -I "./" gateway.c

0 Comments

Ryan Livingston
Answer by Sumeet on 17 Jan 2013

Thank You all for your help.

James: I do have all my header files in one folder. When I tried without the -I as you suggested, I was getting an undefined reference error for all functions declared in my header file and defined in a separate cpp file (with the same name as the header file). Some web-searching revealed that I shouldn't be doing just

 mex simulation.cpp 

but instead

 mex simulation.cpp header.cpp

This worked. Sorry if this is well-known, I wasn't aware of this - I don't have a CS or compilers background.

Thanks again James, Walter and Ryan!

0 Comments

Sumeet

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