function xyOut = solver(a, xyIn, wts)
diag(sum(a));
[V,~]=eig(ans-a,ans);
N = length(a);
[p1i,p2i] = find( triu(a,1));
[pickr,pickc] = find(tril(true(length(p1i)),-1));
for ss=1:3
[xy{ss} xy{ss+3}] = solver_alfonsoz (a, ss+1, N, V+rand(size(V))/25);
end
xy{7} = solver_hannes(xyIn, N, V(:,2:3),0);
parfor ss=1:7
NN(ss)=gradeIt(p1i,p2i,pickr,pickc,xy{ss})
end
[ZBest,best] = min(NN);
xyOut = xy{best};
xyOut = bsxfun(@minus,xyOut,round(wts*(xyOut-xyIn)./sum(wts)));
sprev = rng(0,'twister');
for ii=1:2
for jiggle=1:15
xyOutZ=xyOut+randi([-ii ii],N,2);
gradeIt(p1i,p2i,pickr,pickc,xyOutZ);
if ans<ZBest && size(unique(xyOutZ,'rows'),1)==N
xyOut=xyOutZ;
ZBest=ans;
end
end
end
rng(sprev);
end
function [xyOut xyOut1] = solver_alfonsoz(a, ss, N, V)
randn('seed',ss);
xyOut=V(:,2:3);
sN=sqrt(N);
for ncut=1:2
Mbeta=((1-ss/15)*eye(N)+(ss/15)*bsxfun(@rdivide,a+eye(N),sum(a,2)+1))^10;
for n1=1:117
xyOut=Mbeta*xyOut;
bsxfun(@minus,xyOut,sum(xyOut)/N);
[c1,D]=svd(ans');
xyOut=ans*c1*diag(sN./(.1+D([1 4])))*c1';
end
[i,j]=find(a>0.002+ss*5.1e-4);
sum((xyOut(i,:)-xyOut(j,:)).^2,2);
k=find(ans>(3.15 + ss*0.102)*mean(ans));
if isempty(k), break; end
a(i(k)+N*(j(k)-1))=0.002+ss*5.1e-4;
end
xyOutH=xyOut;
single_idx = find(sum(a)==1);
[singles_link, ~] = find(a(:,single_idx)==1);
xyOut(single_idx,:)=xyOut(singles_link,:);
for zsingle=1:2
xyOut0=sqrt(N)*detrend(xyOut,'constant')*diag(1./std(xyOut,1,1));
k=5;
[sxyOut0,idxequal]=sortrows(round(15*xyOut0));
idxequal=idxequal(all(~diff(sxyOut0,1,1),2));
xyOut=round(xyOut0);
while size(unique(xyOut,'rows'),1)~=N
k=k*(1.0+ss*0.055);
xyOut=xyOut0*k;
xyOut(idxequal,:)=(xyOut0(idxequal,:)+randn(numel(idxequal),2)/(9+ss))*k;
xyOut=round(xyOut);
end
if zsingle==1
xyOut1=xyOut;
xyOut=xyOutH;
end
end
end
function xyOut = solver_hannes(xyIn, N, V,xyOut)
mult = norm(max(xyIn)-min(xyIn))/norm(max(V)-min(V));
while size(unique(xyOut,'rows'),1)<N
xyOut = round(V*mult);
[~,i] = unique(xyOut,'rows');
m = setdiff(1:N,i);
xyOut(m,:) = xyOut(m,:) + randi([-1 1],length(m),2);
mult = mult*1.5;
end
end
function ans = gradeIt(p1i,p2i,pickr,pickc,XYnew)
X = [XYnew(p1i,:) XYnew(p2i,:)];
xa = X(pickr,:);
xb = X(pickc,:);
A13 = xa(:,1) - xa(:,3);
A24 = xa(:,2) - xa(:,4);
B13 = xb(:,1) - xb(:,3);
B24 = xb(:,2) - xb(:,4);
A = xb(:,1).*xb(:,4) - xb(:,2).*xb(:,3);
B = xa(:,1).*xa(:,4) - xa(:,2).*xa(:,3);
AA = (xa(:,1).*B24 - xa(:,2).*B13 + A) ...
.*(xa(:,3).*B24 - xa(:,4).*B13 + A);
BB = (xb(:,1).*A24 - xb(:,2).*A13 + B) ...
.*(xb(:,3).*A24 - xb(:,4).*A13 + B);
sum(all([ abs(A13) .* AA <=0 ...
abs(A24) .* AA <=0 ...
abs(B13) .* BB <=0 ...
abs(B24) .* BB <=0 ...
],2));
end
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