Highlights from
CoCoMac
- download() A function for downloading xml data from www.cocomac.org. User must supply a .txt file
- gui.m
- circulargraph2(matrix,labels,... circulargraph2(matrix,labels)
- clustering(net, netLabels) Permutates node sequence to
- fc_add_to_listbox(listBox) Function to *add* the selected strings in list box of all nodes, designated by handle
- fc_afterLoad(fig_id, net, net... Clean-up procedures to do after loading data
- fc_allow_animation(panel_anim... Function to make animation panel visible to user. Is
- fc_animate(activ, activLabels... Animate the activation data in matrix 'actv' by plotting green circles on
- fc_calculate_fitline(time_plo... Function to calculate a first degree fit line of the data points
- fc_change_timesteps(noOfTimeS... If the user changes the number of time steps, we need to make sure
- fc_clearGUI(fig_id, activ_plo... This function is called after loading or downloading new network data
- fc_download_data(list_startNo... This is an 'intermediate' function which calls the much bigger
- fc_hide_fitline(fitLine, fitL... Function to show the fitline if the 'show fitline' button is pressed, and
- fc_loadActiv(fig_id, activ_pl... Function to load previously saved data:
- fc_loadData(list_startNodes) Loads a network data file previously saved by download().
- fc_loadSources() Function to request a text file of sourceSites to load ,
- fc_plotCircle(net, netLabels,... Function to plot 'net' as a circular connectivity graph on
- fc_plotPajek(net, netLabels, ... Function to call on pajek.exe (an external program, see
- fc_plot_activ(activ, activ_pl...
- fc_plot_time(activ, time_plot... Function to plot a line graph on 'time_plot_axes' showing the percentage of brain areas
- fc_readPajek(path) Function to read a pajek file and load data into main program
- fc_recalculate_fitLine(fitLin... When the user changes the x limits of the fit line, it must be
- fc_remove_from_listbox(list_s... Removes the selected items in the list box designated with handle
- fc_run_simulation(net, netLab... Called by 'Run simulation' push button. Calculates the spreading
- fc_sanitise(original_cell_arr...
- fc_saveActiv(activ, activLabe... Saves simulation data as matlab varaibles in a .mat file. Variables
- fc_saveAnimation(movieMatrix) Asks user for a save location, and saves a movie matrix generated by
- fc_saveLog(string) Writes a given string to GUI_log.txt
- fc_saveas_pajek(net,netLabels... Ask the user where to save mat file
- fc_setFrame_circle(activ, plo... Called when the current animation frame is changed by the slider or the
- fc_set_nodeList(netLabels, st... Set the list boxes of starting nodes / nodes for removal to the passed cell
- fc_stripXmlTags(xml) The function takes a text string 'xml', which should be the the text
- fc_update_editbox(activ, plot...
- fc_update_slider(activ, plot_... Function to update the value of a slider (using handle passed to
- fc_validate_xml(xmlWithHeader... Function to validate an xml string returned by urlread function
- makeNet(data)
- pajeksave(matrix,labels,posit... pajeksave(matrix,labels,positions,file) - saves a matrix to a
- spread(net, netLabels, alpha) This function will create the following activation spreading
- testThresh(thresh, noOfNodes,... calculate node activities at given time step using given threshold value to see if it satifies
- View all files
from
CoCoMac
by James Allen
Download CoCoMac.org cortical connectivity data, model it as a network, and simulate epileptic sprea |
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