CoCoMac: fc_update_editbox(activ, plot_coords, circular_plot_axes, activ_plot_axes) - File Exchange

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Highlights from
CoCoMac

download() A function for downloading xml data from www.cocomac.org. User must supply a .txt file
gui.m
circulargraph2(matrix,labels,... circulargraph2(matrix,labels)
clustering(net, netLabels) Permutates node sequence to
fc_add_to_listbox(listBox) Function to *add* the selected strings in list box of all nodes, designated by handle
fc_afterLoad(fig_id, net, net... Clean-up procedures to do after loading data
fc_allow_animation(panel_anim... Function to make animation panel visible to user. Is
fc_animate(activ, activLabels... Animate the activation data in matrix 'actv' by plotting green circles on
fc_calculate_fitline(time_plo... Function to calculate a first degree fit line of the data points
fc_change_timesteps(noOfTimeS... If the user changes the number of time steps, we need to make sure
fc_clearGUI(fig_id, activ_plo... This function is called after loading or downloading new network data
fc_download_data(list_startNo... This is an 'intermediate' function which calls the much bigger
fc_hide_fitline(fitLine, fitL... Function to show the fitline if the 'show fitline' button is pressed, and
fc_loadActiv(fig_id, activ_pl... Function to load previously saved data:
fc_loadData(list_startNodes) Loads a network data file previously saved by download().
fc_loadSources() Function to request a text file of sourceSites to load ,
fc_plotCircle(net, netLabels,... Function to plot 'net' as a circular connectivity graph on
fc_plotPajek(net, netLabels, ... Function to call on pajek.exe (an external program, see
fc_plot_activ(activ, activ_pl...
fc_plot_time(activ, time_plot... Function to plot a line graph on 'time_plot_axes' showing the percentage of brain areas
fc_readPajek(path) Function to read a pajek file and load data into main program
fc_recalculate_fitLine(fitLin... When the user changes the x limits of the fit line, it must be
fc_remove_from_listbox(list_s... Removes the selected items in the list box designated with handle
fc_run_simulation(net, netLab... Called by 'Run simulation' push button. Calculates the spreading
fc_sanitise(original_cell_arr...
fc_saveActiv(activ, activLabe... Saves simulation data as matlab varaibles in a .mat file. Variables
fc_saveAnimation(movieMatrix) Asks user for a save location, and saves a movie matrix generated by
fc_saveLog(string) Writes a given string to GUI_log.txt
fc_saveas_pajek(net,netLabels... Ask the user where to save mat file
fc_setFrame_circle(activ, plo... Called when the current animation frame is changed by the slider or the
fc_set_nodeList(netLabels, st... Set the list boxes of starting nodes / nodes for removal to the passed cell
fc_stripXmlTags(xml) The function takes a text string 'xml', which should be the the text
fc_update_editbox(activ, plot...
fc_update_slider(activ, plot_... Function to update the value of a slider (using handle passed to
fc_validate_xml(xmlWithHeader... Function to validate an xml string returned by urlread function
makeNet(data)
pajeksave(matrix,labels,posit... pajeksave(matrix,labels,positions,file) - saves a matrix to a
spread(net, netLabels, alpha) This function will create the following activation spreading
testThresh(thresh, noOfNodes,... calculate node activities at given time step using given threshold value to see if it satifies
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from CoCoMac by James Allen
Download CoCoMac.org cortical connectivity data, model it as a network, and simulate epileptic sprea

fc_update_editbox(activ, plot_coords, circular_plot_axes, activ_plot_axes)

function [] = fc_update_editbox(activ, plot_coords, circular_plot_axes, activ_plot_axes)

set(findobj('tag', 'animation_frame_editbox'), 'string', num2str(round(get(findobj('tag', 'animation_slider'), 'Value'))));
fc_setFrame_circle(activ, plot_coords, round(get(findobj('tag', 'animation_slider'), 'value')), circular_plot_axes);
fc_plot_activ(activ, activ_plot_axes, str2num(get(findobj('tag', 'animation_frame_editbox'), 'string')));

Highlights from CoCoMac

Highlights from
CoCoMac