gethgvbase
No License
%GETHGVBASE returns polymorphism data from the human genome variation db
% http://hgvbase.cgb.ki.se
%
%HGVDATA = gethgvbase(SNPID) reads in a %hgvbase web record from
%EMBL and creates a structure DATA %containing fields corresponding
%to the hgvBase keywords.
%
%FIELDNAME DESCRIPTIONS: a complete %description of field names can be
%found at: %http://hgvbase.cgb.ki.se/cgi-bin/main.pl?page=data_struct.htm
%
% Examples:
%
% data = gethgvbase('SNP000003319')
% hgvData = gethgvbase('SNP000003320')
%
% Reference:
%
%HGVbase: a human sequence variation %database emphasizing data
%quality and a broad spectrum of data %sources. Nucleic Acids Res. 2002 Jan
%1;30(1):387-91.
%
%See also:
%EMBLREAD, FASTAREAD, GENPEPTREAD, %GETGENBANK, SCFREAD, SEQTOOL.
%
%Colin Clarke, Cranfield University - %Analytical Science and Informatics
%$revision 1.0$ $Date: 12/09/2006$
%email: c.clarke.s03@cranfield.ac.uk
data = gethgvbase('SNP000003319')
data =
snpID: 'SNP000003319'
varType: 'SNP'
varStatus: 'Proven'
geneType: 'Functional Gene'
geneSymbol: 'COL4A4'
geneName: 'collagen, type IV, alpha 4'
geneRegion: 'I-Ex:CDS+'
downStreamSequence: 'CCAGGACCAGGTATGAGCCGCATGC'
upStreamSequence: 'TGGGGCTCCCTGGAATGAGAGGCCC'
alleles: [2x1 char]
sourceId: [2x12 char]
DBXREFS: [3x21 char]
citation: [2x41 char]
feature: [14x12 char]
motifChange: []
population: 'European, African and Middle East (90 individuals)'
mesh: [25x31 char]
Cite As
Colin Clarke (2024). gethgvbase (https://www.mathworks.com/matlabcentral/fileexchange/12280-gethgvbase), MATLAB Central File Exchange. Retrieved .
MATLAB Release Compatibility
Platform Compatibility
Windows macOS LinuxCategories
Tags
Community Treasure Hunt
Find the treasures in MATLAB Central and discover how the community can help you!
Start Hunting!Discover Live Editor
Create scripts with code, output, and formatted text in a single executable document.
Version | Published | Release Notes | |
---|---|---|---|
1.0.0.0 | typo layout |