Graph package
by Kyaw Tun
16 Oct 2006
(Updated 06 Jun 2009)
Graph package for molecular biologist
|
Watch this File
|
| File Information |
| Description |
In biology, graph formalism is prevalently used. This graph package is for you to analysis biomolecular interaction network with the comfort of MATLAB. The package includes algorithm like modularity, clustering coefficient, all-pair shortest path (amazingly fast, great if you have 64-bit) and so on. It also do plotting the graph with force directed layout. The graph can be generated from various input format as well as SBML , GML, DOT or SIF file.
The package is written as MATLAB object and furnish with rich tools for manipulating the graph object and export adjacency matrix for further analysis. |
| MATLAB release |
MATLAB 7 (R14)
|
|
Tags for This File
|
| Everyone's Tags |
|
| Tags I've Applied |
|
| Add New Tags |
Please login to tag files.
|
| Updates |
| 17 Oct 2006 |
Updated support for SIF file input and some bug fix. |
| 18 Oct 2006 |
description, keywords update |
| 19 Oct 2006 |
Spectral partitioning update |
| 23 Oct 2006 |
spectral partitioning update |
| 23 Oct 2006 |
Layout update. |
| 27 Oct 2006 |
Update |
| 06 Jun 2009 |
Add graph partitioning, some kernel methods and bug fix |
|
Contact us at files@mathworks.com