Code covered by the BSD License  

Highlights from
MGraph

from MGraph by junbai wang
Probabilistic graphical models for reconstruction of genetic regulatory networks using DNA microarra

dsep(X, Y, S, G)
function sep = dsep(X, Y, S, G)
% DSEP Is X indep Y given S wrt DAG G?
% sep = dsep(X, Y, S, G)
%
% Instead of using the Bayes-Ball criterion, we see if S separates X and Y
% in the moralized ancestral graph.

conn = reachability_graph(G);
M = myunion(myunion(X, Y), S);
[A,junk] = find(conn(:, M));
A = unique(A);
A = myunion(A, M);
GM = moralize(G(A,A));
%sep = graph_separated(GM, X, Y, S);
sep = graph_separated(GM, find_equiv_posns(X,A), find_equiv_posns(Y,A), find_equiv_posns(S,A));

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