Data Browser: calcBurstProb(varargin) - File Exchange

Code covered by the BSD License

Highlights from
Data Browser

exportSettings
newScope(varargin) display data channels in a scrollable window
pspGui(lastVals) GUI for detecting PSPs
timeControl(right, bottom)
MTEO(inData, kData, threshold... after Choi and Kim, Electronics Letters, 38(12) 2002, 541-3 and
analysisAxis(plotName, axisHa... linkaxes([handles.analysisAxis{whichAxis}.(tempFields{end - 1}) handles.analysisAxis{whichAxis}.(plotName)], 'y');
apHeight(inData, timePerPoint... spikeHeights = APHeight(dataTrace, timerPerPoint, startTime, outputAxisHandle);
apThreshold(inData, timePerPo... thresholds = APthreshold(dataTrace, timerPerPoint, startTime, outputAxisHandle);
apWidth(traceData, timePerPoi... apWidths = APWidth(dataTrace, timerPerPoint, startTime, outputAxisHandle);
apWidthHM(inData, timePerPoin... apWidthsAtHalfMax = APWidthHM(dataTrace, timerPerPoint, startTime, outputAxisHandle);
autoCorrelate(varargin) show an autocorrelogram
burstingProbability(inData, t... pValue = burstingProbability(traceData, threshTime);
calcBurstProb(varargin)
calcMean(inData) find the greatest value of the all points histogram
calcSTA(varargin)
calcSTO(varargin)
cell2mat(c) CELL2MAT Convert the contents of a cell array into a single matrix.
characterizePSPs(PSPs, totalT...
colorSpread(m) COLORCUBE Enhanced color-cube color map.
crossCorr(data, corrVals, coi... determine if we're doing an autocorrelogram
crosscorrelateSetup(varargin) smoothData = hist(spikeTimes, diff(correlationBounds) + 1);
detectCellAttached(inData, ti...
detectExtracellular(inData, t...
detectPSP(inData, timePerPoin...
detectPSPs(data, varargin) use this function to detect the PSPs in your data using a PSP finding algorithm
detectSpikes(inData, spikeHei... spikes = detectSpikes(inData, spikeHeight, whereCall)
detectWCAPs(inData, timePerPo...
eventTriggeredAverage(events,... calculate the event-triggered average in postTrace using preTrace's spikes
exportWithAxes(figure) function for converting a newScope to an enhanced meta-file on the clipboard
exportWithScaleBars(figure) function for converting a newScope to an enhanced meta-file on the clipboard
fastAHP(inData, timePerPoint,... ahpDepths = fastAHP(dataTrace, timerPerPoint, startTime, outputAxisHandle);
fastAHPSlope(inData, timePerP... ahpDepths = fastAHP(dataTrace, timerPerPoint, startTime, outputAxisHandle);
fcnMin(inData, number, type) finds the minima of the given input data
findSteps(protocol, ampNum) function stepData = findSteps(protocol, ampNum)
findStims(protocol, isIndex) ... stimTimes is a cell array of n x 2 matrices where column one is the
fit1Exp(yData, timePerPoint, ... fits single exponent to data
fit2Exp(yData, timePerPoint, ... fits two exponents to data
fit3Exp(yData, timePerPoint, ... fits three exponents to data
fitDecayDouble(yData, PSPtype... fits taus to ydata that is slowing in x (only determined by the initial offset)
fitDecaySingle(yData, PSPtype... fits tau to ydata that is slowing in x (only determined by the initial offset)
fitDecayTriple(yData, PSPtype... fits taus to ydata that is slowing in x (only determined by the initial offset)
fitLine(yData, timePerPoint, ... fits line to data
intervalHist(varargin) show an interval histogram
isiCv(inData) calculates the coefficient of variation for the inter-spike interval
isiCvEvents(varargin)
jointDist(varargin) show a joint distribution
metaBar(titles, xData, yData) generate mega plot
metaCorrEvents(varargin)
movingAverage(inData, windowS... use a boxcar filter of length windowSize points on inData
msec2point(inString, pointsPe...
newScale(objectHandle, eventI...
normalizeMatrix(inMatrix, dim... normalize a matrix along a given dimension
oneSidedDeviation(inData) use an outlier-insensitive deviation measure that assumes a mean of zero
overlayPSPs(inData, timeWindo... display the PSPs for a given trace overlayed
plotAverageFreq(varargin)
plotFreq(varargin)
prepForPrint(currentAxis, yVa... Hides axes and places a scale bar with y-units set by yVal (a character
printWithAxes(figure) function for printing a newScope
printWithScaleBars(figure) function for printing a newScope
setAxisLabels(axisHandle)
showEvents(axisHandle)
showFrameMarker(axisHandle) deal with frame marker if present
showStims(figHandle, showLege... show TTL stimuli if they are blanked
whichChannel(protocol, ampNum... determine which channel a given amp is using
Contents.m
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from Data Browser by Phil Larimer
A utility to browse data files that involve one or more channels of data over time.

calcBurstProb(varargin)

function outText = calcBurstProb(varargin)
if ~nargin
    outText = 'Bursting Probability';
else
    events = getappdata(gca, 'events');

    outValue = burstingProbability(events(varargin{5}).data');
    set(get(gca, 'userdata'), 'string', num2str(outValue));
end

Highlights from Data Browser

Highlights from
Data Browser