Code covered by the BSD License  

Highlights from
Data Browser

• exportSettings
• newScope(varargin) display data channels in a scrollable window
• pspGui(lastVals) GUI for detecting PSPs
• timeControl(right, bottom)
• MTEO(inData, kData, threshold... after Choi and Kim, Electronics Letters, 38(12) 2002, 541-3 and
• analysisAxis(plotName, axisHa... linkaxes([handles.analysisAxis{whichAxis}.(tempFields{end - 1}) handles.analysisAxis{whichAxis}.(plotName)], 'y');
• apHeight(inData, timePerPoint... spikeHeights = APHeight(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• apThreshold(inData, timePerPo... thresholds = APthreshold(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• apWidth(traceData, timePerPoi... apWidths = APWidth(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• apWidthHM(inData, timePerPoin... apWidthsAtHalfMax = APWidthHM(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• autoCorrelate(varargin) show an autocorrelogram
• burstingProbability(inData, t... pValue = burstingProbability(traceData, threshTime);
• calcBurstProb(varargin)
• calcMean(inData) find the greatest value of the all points histogram
• calcSTA(varargin)
• calcSTO(varargin)
• cell2mat(c) CELL2MAT Convert the contents of a cell array into a single matrix.
• characterizePSPs(PSPs, totalT...
• colorSpread(m) COLORCUBE Enhanced color-cube color map.
• crossCorr(data, corrVals, coi... determine if we're doing an autocorrelogram
• crosscorrelateSetup(varargin) smoothData = hist(spikeTimes, diff(correlationBounds) + 1);
• detectCellAttached(inData, ti...
• detectExtracellular(inData, t...
• detectPSP(inData, timePerPoin...
• detectPSPs(data, varargin) use this function to detect the PSPs in your data using a PSP finding algorithm
• detectSpikes(inData, spikeHei... spikes = detectSpikes(inData, spikeHeight, whereCall)
• detectWCAPs(inData, timePerPo...
• eventTriggeredAverage(events,... calculate the event-triggered average in postTrace using preTrace's spikes
• exportWithAxes(figure) function for converting a newScope to an enhanced meta-file on the clipboard
• exportWithScaleBars(figure) function for converting a newScope to an enhanced meta-file on the clipboard
• fastAHP(inData, timePerPoint,... ahpDepths = fastAHP(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• fastAHPSlope(inData, timePerP... ahpDepths = fastAHP(dataTrace, timerPerPoint, startTime, outputAxisHandle);
• fcnMin(inData, number, type) finds the minima of the given input data
• findSteps(protocol, ampNum) function stepData = findSteps(protocol, ampNum)
• findStims(protocol, isIndex) ... stimTimes is a cell array of n x 2 matrices where column one is the
• fit1Exp(yData, timePerPoint, ... fits single exponent to data
• fit2Exp(yData, timePerPoint, ... fits two exponents to data
• fit3Exp(yData, timePerPoint, ... fits three exponents to data
• fitDecayDouble(yData, PSPtype... fits taus to ydata that is slowing in x (only determined by the initial offset)
• fitDecaySingle(yData, PSPtype... fits tau to ydata that is slowing in x (only determined by the initial offset)
• fitDecayTriple(yData, PSPtype... fits taus to ydata that is slowing in x (only determined by the initial offset)
• fitLine(yData, timePerPoint, ... fits line to data
• intervalHist(varargin) show an interval histogram
• isiCv(inData) calculates the coefficient of variation for the inter-spike interval
• isiCvEvents(varargin)
• jointDist(varargin) show a joint distribution
• metaBar(titles, xData, yData) generate mega plot
• metaCorrEvents(varargin)
• movingAverage(inData, windowS... use a boxcar filter of length windowSize points on inData
• msec2point(inString, pointsPe...
• newScale(objectHandle, eventI...
• normalizeMatrix(inMatrix, dim... normalize a matrix along a given dimension
• oneSidedDeviation(inData) use an outlier-insensitive deviation measure that assumes a mean of zero
• overlayPSPs(inData, timeWindo... display the PSPs for a given trace overlayed
• plotAverageFreq(varargin)
• plotFreq(varargin)
• prepForPrint(currentAxis, yVa... Hides axes and places a scale bar with y-units set by yVal (a character
• printWithAxes(figure) function for printing a newScope
• printWithScaleBars(figure) function for printing a newScope
• setAxisLabels(axisHandle)
• showEvents(axisHandle)
• showFrameMarker(axisHandle) deal with frame marker if present
• showStims(figHandle, showLege... show TTL stimuli if they are blanked
• whichChannel(protocol, ampNum... determine which channel a given amp is using
• Contents.m
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