Code covered by the BSD License  

Highlights from
3D Free Form Image Registration Toolbox (GUI)

• Crop_image(varargin) APPLY_IMAGE M-file for apply_image.fig
• Dcoord(varargin) DCOORD M-file for Dcoord.fig
• Deform(varargin) DEFORM M-file for Deform.fig
• Disocenter(varargin) DISOCENTER M-file for Disocenter.fig
• FFD4D(varargin) FFD4D M-file for FFD4D.fig
• Registration_Parameters(varar... REGISTRATION_PARAMETERS M-file for Registration_Parameters.fig
• auto_segmentation(varargin) AUTO_SEGMENTATION M-file for auto_segmentation.fig
• createpatient(varargin) CREATEPATIENT M-file for createpatient.fig
• featurep(varargin) FEATUREP M-file for featurep.fig
• formatsel(varargin) FORMATSEL M-file for formatsel.fig
• formatsel2(varargin) FORMATSEL2 M-file for formatsel2.fig
• load_cont(varargin) LOAD_CONT M-file for load_cont.fig
• load_patient(varargin) LOAD_PATIENT M-file for load_patient.fig
• name_dose(varargin) NAME_DOSE M-file for name_dose.fig
• name_image(varargin) NAME_IMAGE M-file for name_image.fig
• newimage(varargin) NEWIMAGE M-file for newimage.fig
• reg_params(varargin) REG_PARAMS M-file for reg_params.fig
• registration(varargin) REGISTRATION M-file for registration.fig
• resolution(varargin) RESOLUTION M-file for resolution.fig
• validation(varargin) VALIDATION M-file for Validation.fig
• RTOGread(fullpath)
• Registration_Parameters(varar... REGISTRATION_PARAMETERS M-file for Registration_Parameters.fig
• amvd(base,dgridx,dgridy) amvd function outlines bone structures and ensures that deformations are
• amvd3D.m
• amvold(dgridx,dgridy,dgridz,r... amvold.m applies a formula similar to the maximum volume displacement but
• autoseg(image,type)
• bspline(u,k) calculates the derivative of kth basis function of a cubic B-spline
• bspline2(u,k) calculates the derivative of kth basis function of a cubic B-spline
• calcDVH(doses3D,contour,rez) volume introduced from using cubic voxels at the edge of the ROI as opposed to using more precise
• calcgrad(base,mask,dgridx,dgr... distance transforms of images.
• calcgrad3D(base,distmask,dgri... distance transforms of images.
• calcgrad3D2(base,distmask,dgr... distance transforms of images.
• dLdPx(base,sz2,sz,m,n,i1,j1) determine the change in deformation in the x direction for the mth by nth
• dLdPx3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the x direction for the mth by nth
• dLdPy(base,sz2,sz,m,n,i1,j1) determine the change in deformation in the y direction for the mth by nth
• dLdPy3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the y direction for the mth by nth
• dLdPz3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the y direction for the mth by nth
• dLdx(base,dgridx,dgridy) calculate the derivative of the change in the tensor product for a free
• dLdx3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
• dLdy(base,dgridx,dgridy) calculate the derivative of the change in the tensor product for a free
• dLdy3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
• dLdz3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
• dbspline(u,k); calculates the derivative of kth basis function of a cubic B-spline
• dbspline2(u,k); calculates the derivative of kth basis function of a cubic B-spline
• ddLdxdPx(base,sz2,sz,m,n,i1,j... determine the change in deformation in the x direction for the mth by nth
• ddLdxdPx3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
• ddLdydPy(base,sz2,sz,m,n,i1,j... determine the change in deformation in the x direction for the mth by nth
• ddLdydPy2(base,dgrid,m,n) determine the change in deformation in the x direction for the mth by nth
• ddLdydPy3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
• ddLdzdPz3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
• dferror3D(fpoints,fpoints2,m,...
• disttrans(coords,size)
• drawcont(shape,dose) convert contour outline (shape) to 2D dose distribution
• eliminateskin(image1)
• elocal(base,mask,dgridx,dgrid... distance transforms of images.
• elocal3D.m
• errormn(base,mask,dgridx,dgri... distsource = bwdist(image);
• ferror3D(fpoints,fpoints2,dgr... try
• finterp2(x,y,z,xi,yi,uniformF...
• finterp3(xInterpV, yInterpV, ...
• getRTOGcont(fullpath,segname,...
• getRTOGcont2(fullpath,segname...
• getRTOGcont3(fullpath,segname... fullpath is the path including filename and extension to the RTOG header
• getRTOGstructures(fullpath)
• imdeform(image1,image2)
• imdeform2(density,image1,imag...
• imdeform3D(image1,image2,alph... Imdeform3D
• iminterpn(varargin) IMINTERPN Multidimensional interpolation using Image Processing Toolbox functions.
• imrecreate3D.m
• imrecreate3D2(base,dgridx,dgr... recreate an image based on it's deformation control point grid
• imrecreate3D3.m
• imrecreate3D_eff.m
• interpslice(image1,sz2) this function was created as a method of performing 3 Dimension
• irongrid(gridx,gridy) smooth down
• irongrid3D(gridx,gridy,gridz) smooth down
• loadDICOM(sFolder) LOADDICOM M-file
• loadDICOM2(sFolder) LOADDICOM M-file
• loadDICOM2(sFolder) LOADDICOM M-file
• loadDICOM4(sFolder) LOADDICOM M-file
• loadRTOG(filename)
• numbername(number,digits)
• pathdef PATHDEF Search path defaults.
• readRTOGDose(fullPath) READRTOGDOSE M-file
• readRTOGDose(fullPath) READRTOGDOSE M-file
• recalcvol(sz,dgridx,dgridy,dg... shed padding
• refgrid(dgrid,M,N);
• slice3DVolOrtho(data3M, xV, y... "slice3DVolOrtho"
• DVH_extract.m
• NTCP_TCP.m
• coefficients.m
• copystuff.m
• crop.m
• dgrid.m
• example.m
• example2.m
• metadata.m
• tempf.m
• writing.m
• View all files