Code covered by the BSD License
Highlights from
3D Free Form Image Registration Toolbox (GUI)
- Crop_image(varargin) APPLY_IMAGE M-file for apply_image.fig
- Dcoord(varargin) DCOORD M-file for Dcoord.fig
- Deform(varargin) DEFORM M-file for Deform.fig
- Disocenter(varargin) DISOCENTER M-file for Disocenter.fig
- FFD4D(varargin) FFD4D M-file for FFD4D.fig
- Registration_Parameters(varar... REGISTRATION_PARAMETERS M-file for Registration_Parameters.fig
- auto_segmentation(varargin) AUTO_SEGMENTATION M-file for auto_segmentation.fig
- createpatient(varargin) CREATEPATIENT M-file for createpatient.fig
- featurep(varargin) FEATUREP M-file for featurep.fig
- formatsel(varargin) FORMATSEL M-file for formatsel.fig
- formatsel2(varargin) FORMATSEL2 M-file for formatsel2.fig
- load_cont(varargin) LOAD_CONT M-file for load_cont.fig
- load_patient(varargin) LOAD_PATIENT M-file for load_patient.fig
- name_dose(varargin) NAME_DOSE M-file for name_dose.fig
- name_image(varargin) NAME_IMAGE M-file for name_image.fig
- newimage(varargin) NEWIMAGE M-file for newimage.fig
- reg_params(varargin) REG_PARAMS M-file for reg_params.fig
- registration(varargin) REGISTRATION M-file for registration.fig
- resolution(varargin) RESOLUTION M-file for resolution.fig
- validation(varargin) VALIDATION M-file for Validation.fig
- RTOGread(fullpath)
- Registration_Parameters(varar... REGISTRATION_PARAMETERS M-file for Registration_Parameters.fig
- amvd(base,dgridx,dgridy) amvd function outlines bone structures and ensures that deformations are
- amvd3D.m
- amvold(dgridx,dgridy,dgridz,r... amvold.m applies a formula similar to the maximum volume displacement but
- autoseg(image,type)
- bspline(u,k) calculates the derivative of kth basis function of a cubic B-spline
- bspline2(u,k) calculates the derivative of kth basis function of a cubic B-spline
- calcDVH(doses3D,contour,rez) volume introduced from using cubic voxels at the edge of the ROI as opposed to using more precise
- calcgrad(base,mask,dgridx,dgr... distance transforms of images.
- calcgrad3D(base,distmask,dgri... distance transforms of images.
- calcgrad3D2(base,distmask,dgr... distance transforms of images.
- dLdPx(base,sz2,sz,m,n,i1,j1) determine the change in deformation in the x direction for the mth by nth
- dLdPx3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the x direction for the mth by nth
- dLdPy(base,sz2,sz,m,n,i1,j1) determine the change in deformation in the y direction for the mth by nth
- dLdPy3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the y direction for the mth by nth
- dLdPz3D(sz3,sz2,sz,m,n,p,i1,j... determine the change in deformation in the y direction for the mth by nth
- dLdx(base,dgridx,dgridy) calculate the derivative of the change in the tensor product for a free
- dLdx3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
- dLdy(base,dgridx,dgridy) calculate the derivative of the change in the tensor product for a free
- dLdy3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
- dLdz3D(sz,dgridx,dgridy,dgrid... calculate the derivative of the change in the tensor product for a free
- dbspline(u,k); calculates the derivative of kth basis function of a cubic B-spline
- dbspline2(u,k); calculates the derivative of kth basis function of a cubic B-spline
- ddLdxdPx(base,sz2,sz,m,n,i1,j... determine the change in deformation in the x direction for the mth by nth
- ddLdxdPx3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
- ddLdydPy(base,sz2,sz,m,n,i1,j... determine the change in deformation in the x direction for the mth by nth
- ddLdydPy2(base,dgrid,m,n) determine the change in deformation in the x direction for the mth by nth
- ddLdydPy3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
- ddLdzdPz3D(sz3,sz2,sz,m,n,p,i... determine the change in deformation in the x direction for the mth by nth
- dferror3D(fpoints,fpoints2,m,...
- disttrans(coords,size)
- drawcont(shape,dose) convert contour outline (shape) to 2D dose distribution
- eliminateskin(image1)
- elocal(base,mask,dgridx,dgrid... distance transforms of images.
- elocal3D.m
- errormn(base,mask,dgridx,dgri... distsource = bwdist(image);
- ferror3D(fpoints,fpoints2,dgr... try
- finterp2(x,y,z,xi,yi,uniformF...
- finterp3(xInterpV, yInterpV, ...
- getRTOGcont(fullpath,segname,...
- getRTOGcont2(fullpath,segname...
- getRTOGcont3(fullpath,segname... fullpath is the path including filename and extension to the RTOG header
- getRTOGstructures(fullpath)
- imdeform(image1,image2)
- imdeform2(density,image1,imag...
- imdeform3D(image1,image2,alph... Imdeform3D
- iminterpn(varargin) IMINTERPN Multidimensional interpolation using Image Processing Toolbox functions.
- imrecreate3D.m
- imrecreate3D2(base,dgridx,dgr... recreate an image based on it's deformation control point grid
- imrecreate3D3.m
- imrecreate3D_eff.m
- interpslice(image1,sz2) this function was created as a method of performing 3 Dimension
- irongrid(gridx,gridy) smooth down
- irongrid3D(gridx,gridy,gridz) smooth down
- loadDICOM(sFolder) LOADDICOM M-file
- loadDICOM2(sFolder) LOADDICOM M-file
- loadDICOM2(sFolder) LOADDICOM M-file
- loadDICOM4(sFolder) LOADDICOM M-file
- loadRTOG(filename)
- numbername(number,digits)
- pathdef PATHDEF Search path defaults.
- readRTOGDose(fullPath) READRTOGDOSE M-file
- readRTOGDose(fullPath) READRTOGDOSE M-file
- recalcvol(sz,dgridx,dgridy,dg... shed padding
- refgrid(dgrid,M,N);
- slice3DVolOrtho(data3M, xV, y... "slice3DVolOrtho"
- DVH_extract.m
- NTCP_TCP.m
- coefficients.m
- copystuff.m
- crop.m
- dgrid.m
- example.m
- example2.m
- metadata.m
- tempf.m
- writing.m
- View all files
from
3D Free Form Image Registration Toolbox (GUI)
by Daniel Markel
A toolbox for performing image registrations on 4D RTOG files or any other volumetric image. |
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Contact us at files@mathworks.com