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Enhancing e-Infrastructures with Advanced Technical Computing: Parallel MATLAB® on the Grid

by Arjav Chakravarti

 

12 Sep 2008 (Updated 12 Nov 2008)

code exercises for M11 tutorial at SC08

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Description

The MATLAB and gLite code exercises for the M11 tutorial at SC08, jointly delivered by The MathWorks and EGEE  
 
Note: Exercise 2 and Exercise 6 were written to operate on large data sets. However, in order to comply with restrictions on data uploads to MATLAB Central, a reduced data set has been provided.  
MATLAB release MATLAB 7.7 (R2008b)
Other requirements All programs require Parallel Computing Toolbox. MATLAB Distributed Computing Server is optional. Some programs require SimBiology or Optimization Toolbox
Zip File Content  
Published M Files Exercise5_batch_parfor, Exercise1_SimBio_parfor, Message Passing used in Calculating the Block Average of a Distributed Matrix, Portfolio Optimization Demo (with Distributed Arrays and SPMD), Parfor version of Portfolio Optimization, Exercise3_SimBio_jobs, Parfor version of Portfolio Optimization, Parfor version of Portfolio Optimization, Exercise6_batch_spmd, Parfor version of Portfolio Optimization
Other Files
Tutorial_Code/Exercises/Exercise4_MPI/html/Exercise4_Image_MPI_01.png,
Tutorial_Code/Exercises/Exercise3_jobs/,
Tutorial_Code/Demos/Demo1_parfor/,
Tutorial_Code/Exercises/Exercise2_spmd/main_Exercise2_PortOptim_spmd.m,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/active.png,
Tutorial_Code/Demos/Demo1_parfor/html/paralleldemo_optim_parfor_03.png,
Tutorial_Code/Demos/Demo3_batch/Demo3_plot_optim.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt2.mat,
Tutorial_Code/Demos/Demo4_jobs/Demo4_task_optim_jobs.m,
Tutorial_Code/Demos/Demo6_batch_parfor/html/paralleldemo_optim_parfor_01.png,
Tutorial_Code/Demos/Demo6_batch_parfor/private/pctdemo_data_mvar.mat,
Tutorial_Code/,
Tutorial_Code/Exercises/Exercise6_spmd_batch/html/Exercise6_batch_spmd.png,
Tutorial_Code/Exercises/Exercise2_spmd/html/main_Exercise2_PortOptim_spmd_01.png,
Tutorial_Code/Exercises/Exercise4_MPI/Exercise4_Image_MPI.m,
Tutorial_Code/Exercises/Exercise2_spmd/html/,
Tutorial_Code/Demos/Demo1_parfor/Demo1_setup_optim.m,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/dimer1.png,
Tutorial_Code/Demos/Demo4_jobs/private/pConvertToPVArrays.m,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt2.mat,
Tutorial_Code/Demos/Demo1_parfor/Demo1_plot_optim.m,
Tutorial_Code/Demos/Demo3_batch/private/pctdemo_data_mvar.mat,
Tutorial_Code/Demos/Demo6_batch_parfor/Demo6_task_optim_script.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/html/,
Tutorial_Code/Demos/Demo6_batch_parfor/,
Tutorial_Code/Demos/Demo1_parfor/private/pTypeChecker.m,
Tutorial_Code/Exercises/Exercise1_parfor/,
Tutorial_Code/Exercises/Exercise3_jobs/sbiosimulate_wrapper.m,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/inactive.png,
Tutorial_Code/Demos/Demo3_batch/Demo3_task_optim_parfor.m,
Tutorial_Code/Demos/Demo6_batch_parfor/Demo6_setup_optim.m,
Tutorial_Code/Demos/Demo6_batch_parfor/Demo6_plot_optim.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_plot_optim.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_loadReturns.m,
Tutorial_Code/Demos/Demo6_batch_parfor/html/paralleldemo_optim_parfor_03.png,
Tutorial_Code/Exercises/Exercise2_spmd/Exercise2_loadReturns.m,
Tutorial_Code/Demos/Demo3_batch/html/paralleldemo_optim_parfor_01.png,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt4.mat,
Tutorial_Code/Exercises/Exercise4_MPI/html/,
Tutorial_Code/Exercises/Exercise2_spmd/Exercise2_plot_optim.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/,
Tutorial_Code/Exercises/Exercise4_MPI/sampleFunctionAvg.m,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/null.png,
Tutorial_Code/Exercises/Exercise3_jobs/GeneRegulation.sbproj,
Tutorial_Code/Demos/Demo4_jobs/html/paralleldemo_optim_parfor_01.png,
Tutorial_Code/Demos/Demo4_jobs/private/pctdemo_helper_split_vector.m,
Tutorial_Code/Exercises/Exercise1_parfor/GeneRegulation.sbproj,
Tutorial_Code/Demos/Demo4_jobs/html/,
Tutorial_Code/Demos/Demo1_parfor/html/,
Tutorial_Code/Demos/Demo2_spmd/Demo2_spmd.m,
Tutorial_Code/Demos/Demo5_MPI/Demo5_MPI.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/inactive.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/GeneRegulation.sbproj,
Tutorial_Code/Exercises/Exercise5_parfor_batch/Exercise5_interactive_parfor.m,
Tutorial_Code/Exercises/Exercise2_spmd/,
Tutorial_Code/Demos/Demo4_jobs/private/pctdemo_data_optim.mat,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt4.mat,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/null.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/dimer.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/html/,
Tutorial_Code/Exercises/Exercise1_parfor/html/,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt1.mat,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_batch_spmd.m,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/protein.png,
Tutorial_Code/Demos/Demo3_batch/html/paralleldemo_optim_parfor.png,
Tutorial_Code/Demos/Demo6_batch_parfor/html/,
Tutorial_Code/Demos/Demo3_batch/html/paralleldemo_optim_parfor_03.png,
Tutorial_Code/Demos/Demo3_batch/Demo3_batchSPMD.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt8.mat,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt6.mat,
Tutorial_Code/Exercises/Exercise6_spmd_batch/html/Exercise6_batch_spmd_01.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/Exercise5_simBioScriptParfor.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/Exercise5_jobs.m,
Tutorial_Code/Exercises/Exercise3_jobs/html/,
Tutorial_Code/Exercises/Exercise3_jobs/Exercise3_SimBio_jobs.m,
Tutorial_Code/Exercises/Exercise1_parfor/Exercise1_SimBio_parfor.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/,
Tutorial_Code/Exercises/Exercise4_MPI/html/Exercise4_Image_MPI.png,
Tutorial_Code/Demos/Demo4_jobs/,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt1.mat,
Tutorial_Code/Demos/Demo3_batch/Demo3_batchPortfolioOptim.m,
Tutorial_Code/Demos/Demo4_jobs/html/paralleldemo_optim_parfor_03.png,
Tutorial_Code/Demos/Demo6_batch_parfor/private/pTypeChecker.m,
Tutorial_Code/Demos/Demo1_parfor/private/pConvertToPVArrays.m,
Tutorial_Code/Demos/Demo6_batch_parfor/private/pctdemo_data_optim.mat,
Tutorial_Code/Exercises/Exercise5_parfor_batch/sbiosimulate_wrapper.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt6.mat,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/active.png,
Tutorial_Code/Demos/Demo1_parfor/private/pctdemo_data_mvar.mat,
Tutorial_Code/Demos/Demo3_batch/private/pConvertToPVArrays.m,
Tutorial_Code/Demos/Demo1_parfor/html/paralleldemo_optim_parfor_02.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/protein.png,
Tutorial_Code/Demos/Demo3_batch/Demo3_task_optim_script.m,
Tutorial_Code/Demos/Demo1_parfor/Demo1_PorfolioOptim.m,
Tutorial_Code/Demos/Demo6_batch_parfor/private/pDemoFigure.m,
Tutorial_Code/Demos/Demo6_batch_parfor/html/paralleldemo_optim_parfor_02.png,
Tutorial_Code/Demos/Demo3_batch/private/,
Tutorial_Code/Demos/Demo4_jobs/Demo4_plot_optim.m,
Tutorial_Code/Demos/Demo4_jobs/Demo4_setup_optim.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt3.mat,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_OptimScriptSPMD.m,
Tutorial_Code/Exercises/Exercise4_MPI/sampleFunctionNoAvg.m,
Tutorial_Code/Demos/Demo1_parfor/private/,
Tutorial_Code/Demos/Demo1_parfor/Demo1_task_optim.m,
Tutorial_Code/Demos/Demo4_jobs/private/pTypeChecker.m,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_interactive_spmd.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/pngsforSimBio/dimer1.png,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/,
Tutorial_Code/Exercises/Exercise1_parfor/html/Exercise1_SimBio_parfor.png,
Tutorial_Code/Demos/Demo4_jobs/private/pDemoFigure.m,
Tutorial_Code/Demos/Demo6_batch_parfor/private/pConvertToPVArrays.m,
Tutorial_Code/Exercises/Exercise4_MPI/calcRequiredDims.m,
Tutorial_Code/Exercises/Exercise3_jobs/simulation.m,
Tutorial_Code/Exercises/Exercise1_parfor/simulation.m,
Tutorial_Code/Demos/Demo4_jobs/html/paralleldemo_optim_parfor.png,
Tutorial_Code/Exercises/Exercise6_spmd_batch/Exercise6_task_optim.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/simulation.m,
Tutorial_Code/Exercises/Exercise5_parfor_batch/html/Exercise5_batch_parfor.png,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt3.mat,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt8.mat,
Tutorial_Code/Demos/Demo3_batch/private/pctdemo_data_optim.mat,
Tutorial_Code/Demos/Demo6_batch_parfor/html/paralleldemo_optim_parfor.png,
Tutorial_Code/Demos/Demo4_jobs/private/pctdemo_helper_getUniqueErrors.m,
Tutorial_Code/Demos/Demo3_batch/private/pDemoFigure.m,
Tutorial_Code/Demos/Demo4_jobs/private/,
Tutorial_Code/Demos/Demo1_parfor/private/pDemoFigure.m,
Tutorial_Code/Demos/Demo3_batch/html/paralleldemo_optim_parfor_02.png,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt5.mat,
Tutorial_Code/Exercises/Exercise4_MPI/,
Tutorial_Code/Demos/Demo4_jobs/private/pctdemo_data_mvar.mat,
Tutorial_Code/Demos/Demo1_parfor/private/pctdemo_data_optim.mat,
Tutorial_Code/Demos/Demo6_batch_parfor/Demo6_batchPortfolioOptim.m,
Tutorial_Code/Exercises/Exercise1_parfor/html/Exercise1_SimBio_parfor_01.png,
Tutorial_Code/Demos/Demo6_batch_parfor/Demo6_task_optim_parfor.m,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/active.png,
Tutorial_Code/Exercises/Exercise3_jobs/html/Exercise3_SimBio_jobs_01.png,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/protein.png,
Tutorial_Code/Demos/Demo1_parfor/Demo1_task_optim_parfor.m,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/,
Tutorial_Code/Demos/Demo3_batch/,
Tutorial_Code/Demos/Demo4_jobs/Demo4_PorfolioOptim.m,
Tutorial_Code/Demos/Demo3_batch/private/pTypeChecker.m,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt5.mat,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/dimer1.png,
Tutorial_Code/Demos/Demo1_parfor/html/paralleldemo_optim_parfor_01.png,
Tutorial_Code/Demos/Demo3_batch/html/,
Tutorial_Code/Exercises/Exercise3_jobs/pngsforSimBio/dimer.png,
Tutorial_Code/Exercises/Exercise1_parfor/sbiosimulate_wrapper.m,
Tutorial_Code/Exercises/Exercise2_spmd/Exercise2_task_optim.m,
Tutorial_Code/Exercises/Exercise2_spmd/html/main_Exercise2_PortOptim_spmd.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/Exercise5_batch_parfor.m,
Tutorial_Code/Exercises/Exercise3_jobs/html/Exercise3_SimBio_jobs.png,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/inactive.png,
Tutorial_Code/Demos/,
Tutorial_Code/Demos/Demo1_parfor/html/paralleldemo_optim_parfor.png,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/dimer.png,
Tutorial_Code/Exercises/Exercise6_spmd_batch/stockTimeInt7.mat,
Tutorial_Code/Demos/Demo6_batch_parfor/private/,
Tutorial_Code/Demos/Demo5_MPI/,
Tutorial_Code/Demos/Demo3_batch/Demo3_spmd_script.m,
Tutorial_Code/Exercises/Exercise4_MPI/haloNodes.m,
Tutorial_Code/Exercises/Exercise1_parfor/pngsforSimBio/null.png,
Tutorial_Code/Demos/Demo3_batch/Demo3_setup_optim.m,
Tutorial_Code/Demos/Demo2_spmd/,
Tutorial_Code/Demos/Demo4_jobs/html/paralleldemo_optim_parfor_02.png,
Tutorial_Code/Exercises/Exercise5_parfor_batch/html/Exercise5_batch_parfor_01.png,
Tutorial_Code/Demos/Demo4_jobs/Demo4_task_optim.m,
Tutorial_Code/Exercises/,
Tutorial_Code/Exercises/Exercise4_MPI/createSurface.m,
Tutorial_Code/Exercises/Exercise2_spmd/stockTimeInt7.mat
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Updates
12 Nov 2008 local exercises uploaded
12 Nov 2008 Files uploaded

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