4.55556

4.6 | 9 ratings Rate this file 112 Downloads (last 30 days) File Size: 4.14 KB File ID: #21528
image thumbnail

Precision-Recall and ROC Curves

by

 

23 Sep 2008 (Updated )

Calculate and plot P/R and ROC curves for binary classification tasks.

| Watch this File

File Information
Description

Consider a binary classification task, and a real-valued predictor, where higher values denote more confidence that an instance is positive. By setting a fixed threshold on the output, we can trade-off recall (=true positive rate) versus false positive rate (resp. precision).

Depending on the relative class frequencies, ROC and P/R curves can highlight different properties; for details, see e.g., Davis & Goadrich, 'The Relationship Between Precision-Recall and ROC Curves', ICML 2006.

MATLAB release MATLAB 7.4 (R2007a)
Tags for This File   Please login to tag files.
Please login to add a comment or rating.
Comments and Ratings (24)
29 May 2014 kiran paul

hi
can you help me, i am using FCM based CBIR.. i am stuck with the values of precision and recall using threshold could u plz help me with this!

29 May 2014 kiran paul

hi
can you help me, i am using FCM based CBIR.. i am stuck with the values of precision and recall using threshold could u plz help me with this!

29 May 2013 Sbj

Hi,
How do I implement these code to produce the PR curve or ROC curve comparing several segmentation algorithm to the ground truth

07 Apr 2013 Yawar Rehman

Hello Stefan,
can you help me out in it ... i am using SVM quadratic classifier; it returns class labels for test samples (i.e. 1(pos) or -1(neg)); how can i obtain score values for test samples to plot PR and ROC curves? Thanks a lot for the upload!

07 Apr 2013 Yawar Rehman  
05 Aug 2012 Keikim Jap  
04 Mar 2012 wx  
30 Dec 2011 Ahmed  
05 Jul 2011 Saurabh Baghel

this code is intended for only binary classification tasks. what abt multiclass classification

25 Jan 2011 Salha

Very helpful. Thanks!

30 Nov 2010 Chris

Hi, I am interested in computing the F1-score for a precision-recall curve. The equation to do this is (2*precision*recall)/(precision+recall).

The outputs "prec" (precision) and "tpr" (recall), however, are vectors. So, if we take (precision' * recall) / (precision + recall), we will end up with a vector.

Shouldn't the F1-score be a scalar ranging from 0 to 1? Thanks for your help.

Warm Regards

24 Nov 2010 krishna

i have 1 32x32 matrix in which classify the 32 clas ,all diagonal element shows correct classification while off diagonal element shows misclassification,how can i use this file for plotting precision and recall plot
krishna singh
singhkrishna5@gmail.com

04 Nov 2010 Segun Oshin

Hi,

I am trying to obtain the Area Under the Precision-Recall curve. In a previous answer, you stated that your separately submitted aucroc.m would be able to estimate this, but this appears to only measure the area under ROC Curves. Since Precision-Recall curves are different, how can I determine the area under them from an AUROC? Or are you aware of any other methods of measure the Area under P-R curves?

Kind regards

08 Oct 2010 Vladislavs

It seems that your function requires statistics toolbox. There is a function "quantile" which is found only in the statistics toolbox. It would be nice to use alternative or a free equivalent. Thanks for a function!

07 May 2010 Stefan Schroedl

Hi Zeehasham,

precision-recall curves are useful for classifiers that output a score (e.g., the higher, the more likely to be in the positive class) - if the classifier only gives you a class label, you won't get a graph, only a single precision/recall point.

Given such a classifier, for any threshold ("thresh"), you can assign examples as positive if the score exceeds it, otherwise as negative. So, for each threshold, the return values of the procedure give the corresponding precision ("prec"), true-positive rate ("tpr"), and false-positive ("fpr") rate, in that order.

Hope that helps, good luck!

04 May 2010 zeehasham rasheed

Hey Stefan
I am using a binary classifier and want to ask you few questions

Can you tell me whats inside "prec" variable as it displays two rows. Is the first row is precision and second row is recall ?

What is "thresh" variable?

Also can you briefly explain prec/recall graph.

Your code is really helpful. Good Work !

17 Mar 2010 Stefan Schroedl

Hi Ashwin,
the link is the same as the old one.
you can use any classifier to produce the scores, the script is independent of that.

17 Mar 2010 Ashiwn Kumar

Hi Stefan ,
can u provide the link for the new version that u have uploaded.

Can i use baseyian classifier in this code??

Pls reply,so that i can complete my project

Thanks in advance

17 Mar 2010 Stefan Schroedl

Farooq,
I just uploaded a new version with better option descriptions, hope that makes it more usable.
- 'count' (now called 'instanceCount') can be used if there are multiple instances with the same score. This would denote the number of instances, and 'target' the number of positive class members among those.
- area under the curve can be computed more efficiently with my 'auroc' submission.
Thanks!

03 Nov 2009 Skynet

It seems that perfcurve does this now.

17 Apr 2009 Farooq Azam

Very useful code. Thanks.
But I have two questions/comments:
- what is the role of 'count'? an example would help.
- how one would calculate the area under the curve?

Thanks

18 Dec 2008 Stefan Schroedl

The prediction itself is not part of this function, it only evaluates the output taken from an exteral predictor.

08 Dec 2008 Xian Chen

good. thanks a lot.
one question: which algorithm have you used to calculate? bayes? SVM?

12 Oct 2008 David Chiang

Thanks a lot!

Updates
17 Mar 2010

Update for better user interface, added options

17 Mar 2010

Updated function arguments, added options

Contact us