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Fractal visualisation of genomic sequences

03 Nov 2008

Visualise n-mer nucleotide sequences using a fractal visualisation based on a Sierpinski gasket.

File Information
Description	Genomic researchers are often interested in counts of the nucleotide base in a genetic sequence. The Bioinformatics Toolbox contains functions for counting sequences of length one and two, ie individual bases and dimers. But there is currently no way of visualising counts of longer sequences. We turn to some work by Carr that advocates using a fractal visualisation, which is extensible (in theory) to arbitrarily long sequences.
Required Products	Bioinformatics Toolbox Statistics Toolbox
MATLAB release	MATLAB 7.4 (R2007a)

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Everyone's Tags	bioinformatics, biotech, fractal, genetics, graphics(2), pharmaceutical(2), sequence analysis, visualisation, visualization
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