Viewer3D: All Files - File Exchange

Code covered by the BSD License

Highlights from
Viewer3D

ErrorData3D(varargin) ERRORDATA3D M-file for ErrorData3D.fig
InfoData3D(varargin) INFODATA3D M-file for InfoData3D.fig
ReadData3D(varargin) This function ReadData3D allows the user to open medical 3D files. It
choose_from_list(varargin)
raw_read_header(varargin) function for reading header of raw volume file
viewer3d(varargin) VIEWER3D a Matlab 3D volume renderer using the fast shearwarp algorithm.
viewer3d(varargin) VIEWER3D is a Matlab GUI for fast shearwarp volume rendering. It also
viewer3d_about(varargin) VIEWER3D_ABOUT M-file for viewer3d_about.fig
viewer3d_about(varargin) VIEWER3D_ABOUT M-file for viewer3d_about.fig
viewer3d_console(varargin) VIEWER3D_CONSOLE M-file for viewer3d_console.fig
viewer3d_contrast(varargin) VIEWER3D_CONTRAST M-file for viewer3d_contrast.fig
viewer3d_dicominfo(varargin) VIEWER3D_DICOMINFO M-file for viewer3d_dicominfo.fig
viewer3d_error(varargin) VIEWER3D_ERROR M-file for viewer3d_error.fig
viewer3d_error(varargin) VIEWER3D_ERROR M-file for viewer3d_error.fig
viewer3d_histogram(varargin) This function is part of VIEWER3D
viewer3d_histogram(varargin) This function is part of VIEWER3D
viewer3d_lightvector(varargin) VIEWER3D_LIGHTVECTOR M-file for viewer3d_lightvector.fig
viewer3d_qualityspeed(varargi... VIEWER3D_QUALITYSPEED M-file for viewer3d_qualityspeed.fig
viewer3d_segment(varargin) VIEWER3D_SEGMENT MATLAB code for viewer3d_segment.fig
viewer3d_voxelsize(varargin) VIEWER3D_VOXELSIZE M-file for viewer3d_voxelsize.fig
viewer3d_workspacevars(vararg... VIEWER3D_WORKSPACEVARS M-file for viewer3d_workspacevars.fig
B=SnakeInternalForceMatrix2D(... % B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)
B=SnakeInternalForceMatrix3D(... % B=SnakeInternalForceMatrix3D(F,alpha,beta,gamma)
ExternalForceImage2D(I,Wline,... Eextern = ExternalForceImage2D(I,Wline, Wedge, Wterm,Sigma)
ExternalForceImage3D(I,Wline,... Eextern = ExternalForceImage3D(I,Wline, Wedge,Sigma)
FV=MakeContourClockwise3D(FV) This function MakeContourClockwise will make a surface clockwise
FV=Snake3D(I,FV,Options) This function SNAKE implements the basic snake segmentation. A snake is an
FV=SnakeMoveIteration3D(B,FV,... This function will calculate one iteration of contour Snake movement
Fext=GVFOptimizeImageForces2D... This function "GVFOptimizeImageForces" does gradient vector flow (GVF)
Fext=GVFOptimizeImageForces3D... This function "GVFOptimizeImageForces" does gradient vector flow (GVF)
I=bitmapplot(x,y,Ibackground,... BITMAPPLOT, Linear plot in bitmap.
I=bitmaptext(lines,I,pos,opti... The function BITMAPTEXT will insert textline(s) on the specified position
I=imgaussian(I,sigma,siz) IMGAUSSIAN filters an 1D, 2D color/greyscale or 3D image with an
Iout=affine_transform_2d_doub... Affine transformation function (Rotation, Translation, Resize)
Iout=warp(Ibuffer, Ioutsizes,... This function warp, will warp the shear rendered buffer image
J=DrawSegmentedArea2D(P,Isize... Draw the contour as one closed line in a logical image,
J=ImageDerivatives2D(I,sigma,... Gaussian based image derivatives
J=ImageDerivatives3D(I,sigma,... Gaussian based image derivatives
K=InterpolateContourPoints2D(... This function resamples a few points describing a countour , to a smooth
Mview=makeViewMatrix(r,s,t) function makeViewMatrix construct a 4x4 transformation matrix from
Mview=makeViewMatrix(r,s,t) function makeViewMatrix construct a 4x4 transformation matrix from
N=GetContourNormals2D(P) This function calculates the normals, of the contour points
N=PatchNormals3D(FV) This function PATCHNORMALS calculates the normals of a triangulated
P=MakeContourClockwise2D(P) This function MakeContourClockwise will make a contour clockwise
P=SnakeMoveIteration2D(B,P,Fe... This function will calculate one iteration of contour Snake movement
V=hdr_read_volume(info) function for reading volume of HDR/IMG Analyze ( .hdr ) volume file
V=raw_read_volume(info) function for reading volume of raw volume file
[K1 KN ERR]=SeparateKernel(H) This function SEPARATEKERNEL will separate ( do decomposition ) any
[Mshear,Mwarp2D,c]=makeShearW... Function MAKESHEARWARPMATRIX splits a View Matrix in to
[Nx,Ny,Nz]=PatchNormalsDouble...
[P,J]=Snake2D(I,P,Options) This function SNAKE implements the basic snake segmentation. A snake is an
[info] =gipl_read_header(file... function for reading header of Guys Image Processing Lab (Gipl) volume file
[x,y,z]=interpcontour(x,y,z,s...
data=getMyData(handle) Get data struct stored in figure
datasets=dicom_folder_info(li... Function DICOM_FOLDER_INFO gives information about all Dicom files
dicom_read_volume(info) function for reading volume of Dicom files
dicom_write_volume(Volume,fil... This function DICOM_WRITE_VOLUME will write a Matlab 3D volume as
gipl_read_volume(info) function for reading volume of Guys Image Processing Lab (Gipl) volume file
gipl_write_volume(I,fname,sca... Function for writing Guys Image Processing Lab (Gipl) files.
image_interpolation(Iin,Tloca... This function is used to transform an 2D image, in a backwards way with an
index=structfind(a,field,valu... StructFind, Find the index of a certain string or value in a struct
info =mha_read_header(filenam... Function for reading the header of a Insight Meta-Image (.mha,.mhd) file
info =par_read_header(filenam...
info =vff_read_header(filenam...
info =vtk_read_header(filenam... Function for reading the header of a Visualization Toolkit (VTK)
info=dicom_read_volume(filena... function for reading header of Dicom volume file
info=hdr_read_header(filename... function for reading header of HDR/IMG Analyze ( .hdr ) volume file
isi_read_header(filename) function for reading header of isi volume file
isi_read_volume(info) function for reading volume of isi volume file
menubar(varargin) This function MenuBar, allows the user to create menu's anywhere in a figure
mha_read_volume(info) Function for reading the volume of a Insight Meta-Image (.mha, .mhd) file
nii_read_header(filename) function for reading header of NifTi ( .nii ) volume file
nii_read_volume(info) function for reading volume of NifTi ( .nii ) volume file
par_read_volume(info)
render(volume,options) Function RENDER will volume render a image of a 3D volume,
render_bw(V, image_size, Mvie... Function RENDER_BW will volume render a Image of a 3D volume with
render_bw(volume, axes_size, ... Function RENDER_BW will volume render a Image of a 3D volume with
render_color(V, image_size, M... Function RENDER_COLOR will volume render a Image of a 3D volume with
render_color(volume, axes_siz... Function RENDER_COLOR will volume render a Image of a 3D volume with
render_mip(V, image_size, Mvi... Function RENDER_MIP will render a Maximum Intensity Image of a 3D volume
render_mip(volume, image_size... Function RENDER_MIP will render a Maximum Intensity Image of a 3D volume
render_shaded(V, image_size, ... Function RENDER_SHADED will volume render a shaded Image of a 3D volume,
render_shaded(volume, axes_si... Function RENDER_SHADED will volume render a shaded Image of a 3D volume,
setMyData(data,handle) Store data struct in figure
v3d_read_header(filename) function for reading header of V3D Philips Scanner ( .v3d )
v3d_read_volume(info) function for reading volume of V3D Philips Scanner ( .v3d )
v3d_write_volume(I,fname,scal... Function for writing V3D volume files version R6.1
vff_read_volume(info) Function for reading the volume from a Visualization Toolkit (VTK)
vmp_read_header(filename) function for reading header of VMP BrainVoyager ( .vmp )
vmp_read_volume(info) function for readingV MP BrainVoyager ( .vmp ) volume file
vtk_read_volume(info) Function for reading the volume from a Visualization Toolkit (VTK)
xif_read_header(filename) function for reading header of XIF HDllab/ATL ultrasound ( .xif )
xif_read_volume(info) function for reading volume of XIF HDllab/ATL ultrasound ( .xif )
compile_c_files.m
Viewer3D Help
Viewer3D Help
View all files

from Viewer3D by Dirk-Jan Kroon
MIP, Color, Slice and Shaded 3D (shearwarp) Volume Rendering, interactive 3D view/measurement GUI

All files for Viewer3D

/ColorProfiles/CT_Blue_Red.mat
/ColorProfiles/CT_Purple_White.mat
/ExampleData/CommandlineData.mat
/ExampleData/TestVolume.mat
/Help/help001.png
/Help/help002.png
/Help/help003.png
/Help/help004.png
/Help/help005.png
/Help/help006.png
/Help/help007.png
/Help/help008.png
/Help/help009.png
/Help/help010.png
/Help/help011.png
/Help/help012.png
/Help/help013.png
/Help/help014.png
/Help/help015.png
/Help/help016.png
/Help/help017.png
/Help/help018.png
/Help/help019.png
/Help/help020.png
/Help/help021.png
/Help/help022.png
/Help/help023.png
/Help/info.html
/Old_Viewer3D_with_c_code/help/help001.png
/Old_Viewer3D_with_c_code/help/help002.png
/Old_Viewer3D_with_c_code/help/help003.png
/Old_Viewer3D_with_c_code/help/help004.png
/Old_Viewer3D_with_c_code/help/help005.png
/Old_Viewer3D_with_c_code/help/help006.png
/Old_Viewer3D_with_c_code/help/help007.png
/Old_Viewer3D_with_c_code/help/help008.png
/Old_Viewer3D_with_c_code/help/info.html
/Old_Viewer3D_with_c_code/icon_mouse_pan.png
/Old_Viewer3D_with_c_code/icon_mouse_rotate1.png
/Old_Viewer3D_with_c_code/icon_mouse_rotate2.png
/Old_Viewer3D_with_c_code/icon_mouse_zoom.png
/Old_Viewer3D_with_c_code/makeShearWarpMatrix.m
/Old_Viewer3D_with_c_code/makeViewMatrix.m
/Old_Viewer3D_with_c_code/mex_c-code/compile_c_files.m
/Old_Viewer3D_with_c_code/mex_c-code/render_bw.m
/Old_Viewer3D_with_c_code/mex_c-code/render_color.m
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_mip_double.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_mip_single.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_mip_uint16.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_mip_uint8.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vr_double.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vr_single.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vr_uint16.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vr_uint8.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrc_double.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrc_single.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrc_uint16.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrc_uint8.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrs_double.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrs_single.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrs_uint16.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mex_vrs_uint8.c
/Old_Viewer3D_with_c_code/mex_c-code/render_mip.m
/Old_Viewer3D_with_c_code/mex_c-code/render_shaded.m
/Old_Viewer3D_with_c_code/mex_c-code/warp.c
/Old_Viewer3D_with_c_code/render_bw.m
/Old_Viewer3D_with_c_code/render_color.m
/Old_Viewer3D_with_c_code/render_mip.m
/Old_Viewer3D_with_c_code/render_shaded.m
/Old_Viewer3D_with_c_code/viewer3d.fig
/Old_Viewer3D_with_c_code/viewer3d.m
/Old_Viewer3D_with_c_code/viewer3d_about.fig
/Old_Viewer3D_with_c_code/viewer3d_about.m
/Old_Viewer3D_with_c_code/viewer3d_error.fig
/Old_Viewer3D_with_c_code/viewer3d_error.m
/Old_Viewer3D_with_c_code/viewer3d_histogram.fig
/Old_Viewer3D_with_c_code/viewer3d_histogram.m
/Old_Viewer3D_with_c_code/warp.m
/ReadData3D/ReadData3D.fig
/ReadData3D/ReadData3D.m
/ReadData3D/dicom/choose_from_list.m
/ReadData3D/dicom/dicom_folder_info.m
/ReadData3D/dicom/dicom_read_header.m
/ReadData3D/dicom/dicom_read_volume.m
/ReadData3D/dicom/dicom_write_volume.m
/ReadData3D/gipl/gipl_read_header.m
/ReadData3D/gipl/gipl_read_volume.m
/ReadData3D/gipl/gipl_write_volume.m
/ReadData3D/hdr/hdr_read_header.m
/ReadData3D/hdr/hdr_read_volume.m
/ReadData3D/isi/isi_read_header.m
/ReadData3D/isi/isi_read_volume.m
/ReadData3D/lastfile.mat
/ReadData3D/mha/mha_read_header.m
/ReadData3D/mha/mha_read_volume.m
/ReadData3D/nii/nii_read_header.m
/ReadData3D/nii/nii_read_volume.m
/ReadData3D/par/par_read_header.m
/ReadData3D/par/par_read_volume.m
/ReadData3D/raw/raw_read_header.fig
/ReadData3D/raw/raw_read_header.m
/ReadData3D/raw/raw_read_volume.m
/ReadData3D/subfunctions/ErrorData3D.fig
/ReadData3D/subfunctions/ErrorData3D.m
/ReadData3D/subfunctions/InfoData3D.fig
/ReadData3D/subfunctions/InfoData3D.m
/ReadData3D/v3d/v3d_read_header.m
/ReadData3D/v3d/v3d_read_volume.m
/ReadData3D/v3d/v3d_write_volume.m
/ReadData3D/vff/vff_read_header.m
/ReadData3D/vff/vff_read_volume.m
/ReadData3D/vmp/vmp_read_header.m
/ReadData3D/vmp/vmp_read_volume.m
/ReadData3D/vtk/vtk_read_header.m
/ReadData3D/vtk/vtk_read_volume.m
/ReadData3D/xif/xif_read_header.m
/ReadData3D/xif/xif_read_volume.m
/SubFunctions/BasicSnake_version2d/DrawSegmentedArea2D.m
/SubFunctions/BasicSnake_version2d/ExternalForceImage2D.m
/SubFunctions/BasicSnake_version2d/ExternalForceImage3D.m
/SubFunctions/BasicSnake_version2d/GVFOptimizeImageForces2D.m
/SubFunctions/BasicSnake_version2d/GVFOptimizeImageForces3D.m
/SubFunctions/BasicSnake_version2d/GetContourNormals2D.m
/SubFunctions/BasicSnake_version2d/ImageDerivatives2D.m
/SubFunctions/BasicSnake_version2d/ImageDerivatives3D.m
/SubFunctions/BasicSnake_version2d/InterpolateContourPoints2D.m
/SubFunctions/BasicSnake_version2d/MakeContourClockwise2D.m
/SubFunctions/BasicSnake_version2d/MakeContourClockwise3D.m
/SubFunctions/BasicSnake_version2d/PatchNormals3D.m
/SubFunctions/BasicSnake_version2d/PatchNormalsDouble.c
/SubFunctions/BasicSnake_version2d/PatchNormalsDouble.m
/SubFunctions/BasicSnake_version2d/SeparateKernel.m
/SubFunctions/BasicSnake_version2d/Snake2D.m
/SubFunctions/BasicSnake_version2d/Snake3D.m
/SubFunctions/BasicSnake_version2d/SnakeInternalForceMatrix2D.m
/SubFunctions/BasicSnake_version2d/SnakeInternalForceMatrix3D.m
/SubFunctions/BasicSnake_version2d/SnakeMoveIteration2D.m
/SubFunctions/BasicSnake_version2d/SnakeMoveIteration3D.m
/SubFunctions/BasicSnake_version2d/SphereMesh.mat
/SubFunctions/BasicSnake_version2d/imgaussian.m
/SubFunctions/BasicSnake_version2d/testimage.png
/SubFunctions/BasicSnake_version2d/testimage2.png
/SubFunctions/BasicSnake_version2d/testvolume.mat
/SubFunctions/affine_transform_2d_double.c
/SubFunctions/affine_transform_2d_double.m
/SubFunctions/bitmapplot.m
/SubFunctions/bitmaptext.m
/SubFunctions/getMyData.m
/SubFunctions/image_interpolation.c
/SubFunctions/image_interpolation.h
/SubFunctions/image_interpolation.m
/SubFunctions/interpcontour.m
/SubFunctions/makeViewMatrix.m
/SubFunctions/menubar.m
/SubFunctions/setMyData.m
/SubFunctions/structfind.m
/SubFunctions/viewer3d_about.fig
/SubFunctions/viewer3d_about.m
/SubFunctions/viewer3d_console.fig
/SubFunctions/viewer3d_console.m
/SubFunctions/viewer3d_contrast.fig
/SubFunctions/viewer3d_contrast.m
/SubFunctions/viewer3d_dicominfo.fig
/SubFunctions/viewer3d_dicominfo.m
/SubFunctions/viewer3d_error.fig
/SubFunctions/viewer3d_error.m
/SubFunctions/viewer3d_histogram.fig
/SubFunctions/viewer3d_histogram.m
/SubFunctions/viewer3d_lightvector.fig
/SubFunctions/viewer3d_lightvector.m
/SubFunctions/viewer3d_qualityspeed.fig
/SubFunctions/viewer3d_qualityspeed.m
/SubFunctions/viewer3d_segment.fig
/SubFunctions/viewer3d_segment.m
/SubFunctions/viewer3d_voxelsize.fig
/SubFunctions/viewer3d_voxelsize.m
/SubFunctions/viewer3d_workspacevars.fig
/SubFunctions/viewer3d_workspacevars.m
/license.txt
/render.m
/viewer3d.fig
/viewer3d.m

Highlights from Viewer3D

Highlights from
Viewer3D