Viewer3D: viewer3d(varargin) - File Exchange

ErrorData3D(varargin) ERRORDATA3D M-file for ErrorData3D.fig

InfoData3D(varargin) INFODATA3D M-file for InfoData3D.fig

ReadData3D(varargin) This function ReadData3D allows the user to open medical 3D files. It

choose_from_list(varargin)

raw_read_header(varargin) function for reading header of raw volume file

viewer3d(varargin) VIEWER3D a Matlab 3D volume renderer using the fast shearwarp algorithm.

viewer3d(varargin) VIEWER3D is a Matlab GUI for fast shearwarp volume rendering. It also

viewer3d_about(varargin) VIEWER3D_ABOUT M-file for viewer3d_about.fig

viewer3d_console(varargin) VIEWER3D_CONSOLE M-file for viewer3d_console.fig

viewer3d_contrast(varargin) VIEWER3D_CONTRAST M-file for viewer3d_contrast.fig

viewer3d_dicominfo(varargin) VIEWER3D_DICOMINFO M-file for viewer3d_dicominfo.fig

viewer3d_error(varargin) VIEWER3D_ERROR M-file for viewer3d_error.fig

viewer3d_histogram(varargin) This function is part of VIEWER3D

viewer3d_lightvector(varargin) VIEWER3D_LIGHTVECTOR M-file for viewer3d_lightvector.fig

viewer3d_qualityspeed(varargi... VIEWER3D_QUALITYSPEED M-file for viewer3d_qualityspeed.fig

viewer3d_segment(varargin) VIEWER3D_SEGMENT MATLAB code for viewer3d_segment.fig

viewer3d_voxelsize(varargin) VIEWER3D_VOXELSIZE M-file for viewer3d_voxelsize.fig

viewer3d_workspacevars(vararg... VIEWER3D_WORKSPACEVARS M-file for viewer3d_workspacevars.fig

B=SnakeInternalForceMatrix2D(... % B=SnakeInternalForceMatrix2D(nPoints,alpha,beta,gamma)

B=SnakeInternalForceMatrix3D(... % B=SnakeInternalForceMatrix3D(F,alpha,beta,gamma)

ExternalForceImage2D(I,Wline,... Eextern = ExternalForceImage2D(I,Wline, Wedge, Wterm,Sigma)

ExternalForceImage3D(I,Wline,... Eextern = ExternalForceImage3D(I,Wline, Wedge,Sigma)

FV=MakeContourClockwise3D(FV) This function MakeContourClockwise will make a surface clockwise

FV=Snake3D(I,FV,Options) This function SNAKE implements the basic snake segmentation. A snake is an

FV=SnakeMoveIteration3D(B,FV,... This function will calculate one iteration of contour Snake movement

Fext=GVFOptimizeImageForces2D... This function "GVFOptimizeImageForces" does gradient vector flow (GVF)

Fext=GVFOptimizeImageForces3D... This function "GVFOptimizeImageForces" does gradient vector flow (GVF)

I=bitmapplot(x,y,Ibackground,... BITMAPPLOT, Linear plot in bitmap.

I=bitmaptext(lines,I,pos,opti... The function BITMAPTEXT will insert textline(s) on the specified position

I=imgaussian(I,sigma,siz) IMGAUSSIAN filters an 1D, 2D color/greyscale or 3D image with an

Iout=affine_transform_2d_doub... Affine transformation function (Rotation, Translation, Resize)

Iout=warp(Ibuffer, Ioutsizes,... This function warp, will warp the shear rendered buffer image

J=DrawSegmentedArea2D(P,Isize... Draw the contour as one closed line in a logical image,

J=ImageDerivatives2D(I,sigma,... Gaussian based image derivatives

J=ImageDerivatives3D(I,sigma,... Gaussian based image derivatives

K=InterpolateContourPoints2D(... This function resamples a few points describing a countour , to a smooth

Mview=makeViewMatrix(r,s,t) function makeViewMatrix construct a 4x4 transformation matrix from

N=GetContourNormals2D(P) This function calculates the normals, of the contour points

N=PatchNormals3D(FV) This function PATCHNORMALS calculates the normals of a triangulated

P=MakeContourClockwise2D(P) This function MakeContourClockwise will make a contour clockwise

P=SnakeMoveIteration2D(B,P,Fe... This function will calculate one iteration of contour Snake movement

V=hdr_read_volume(info) function for reading volume of HDR/IMG Analyze ( .hdr ) volume file

V=raw_read_volume(info) function for reading volume of raw volume file

[K1 KN ERR]=SeparateKernel(H) This function SEPARATEKERNEL will separate ( do decomposition ) any

[Mshear,Mwarp2D,c]=makeShearW... Function MAKESHEARWARPMATRIX splits a View Matrix in to

[Nx,Ny,Nz]=PatchNormalsDouble...

[P,J]=Snake2D(I,P,Options) This function SNAKE implements the basic snake segmentation. A snake is an

[info] =gipl_read_header(file... function for reading header of Guys Image Processing Lab (Gipl) volume file

[x,y,z]=interpcontour(x,y,z,s...

data=getMyData(handle) Get data struct stored in figure

datasets=dicom_folder_info(li... Function DICOM_FOLDER_INFO gives information about all Dicom files

dicom_read_volume(info) function for reading volume of Dicom files

dicom_write_volume(Volume,fil... This function DICOM_WRITE_VOLUME will write a Matlab 3D volume as

gipl_read_volume(info) function for reading volume of Guys Image Processing Lab (Gipl) volume file

gipl_write_volume(I,fname,sca... Function for writing Guys Image Processing Lab (Gipl) files.

image_interpolation(Iin,Tloca... This function is used to transform an 2D image, in a backwards way with an

index=structfind(a,field,valu... StructFind, Find the index of a certain string or value in a struct

info =mha_read_header(filenam... Function for reading the header of a Insight Meta-Image (.mha,.mhd) file

info =par_read_header(filenam...

info =vff_read_header(filenam...

info =vtk_read_header(filenam... Function for reading the header of a Visualization Toolkit (VTK)

info=dicom_read_volume(filena... function for reading header of Dicom volume file

info=hdr_read_header(filename... function for reading header of HDR/IMG Analyze ( .hdr ) volume file

isi_read_header(filename) function for reading header of isi volume file

isi_read_volume(info) function for reading volume of isi volume file

menubar(varargin) This function MenuBar, allows the user to create menu's anywhere in a figure

mha_read_volume(info) Function for reading the volume of a Insight Meta-Image (.mha, .mhd) file

nii_read_header(filename) function for reading header of NifTi ( .nii ) volume file

nii_read_volume(info) function for reading volume of NifTi ( .nii ) volume file

par_read_volume(info)

render(volume,options) Function RENDER will volume render a image of a 3D volume,

render_bw(V, image_size, Mvie... Function RENDER_BW will volume render a Image of a 3D volume with

render_bw(volume, axes_size, ... Function RENDER_BW will volume render a Image of a 3D volume with

render_color(V, image_size, M... Function RENDER_COLOR will volume render a Image of a 3D volume with

render_color(volume, axes_siz... Function RENDER_COLOR will volume render a Image of a 3D volume with

render_mip(V, image_size, Mvi... Function RENDER_MIP will render a Maximum Intensity Image of a 3D volume

render_mip(volume, image_size... Function RENDER_MIP will render a Maximum Intensity Image of a 3D volume

render_shaded(V, image_size, ... Function RENDER_SHADED will volume render a shaded Image of a 3D volume,

render_shaded(volume, axes_si... Function RENDER_SHADED will volume render a shaded Image of a 3D volume,

setMyData(data,handle) Store data struct in figure

v3d_read_header(filename) function for reading header of V3D Philips Scanner ( .v3d )

v3d_read_volume(info) function for reading volume of V3D Philips Scanner ( .v3d )

v3d_write_volume(I,fname,scal... Function for writing V3D volume files version R6.1

vff_read_volume(info) Function for reading the volume from a Visualization Toolkit (VTK)

vmp_read_header(filename) function for reading header of VMP BrainVoyager ( .vmp )

vmp_read_volume(info) function for readingV MP BrainVoyager ( .vmp ) volume file

vtk_read_volume(info) Function for reading the volume from a Visualization Toolkit (VTK)

xif_read_header(filename) function for reading header of XIF HDllab/ATL ultrasound ( .xif )

xif_read_volume(info) function for reading volume of XIF HDllab/ATL ultrasound ( .xif )

compile_c_files.m

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