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IPN tools for Test-Retest Reliability Analysis



16 Nov 2008 (Updated )

This is one part of my IPN toolbox, aiming at the reliability analysis of neuroimaging meaures.

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The basic functions include the MATLAB implementation of ICC (Intraclass Correlation Coefficient), CCC (Corcordance Correlation Coefficient) and Kendall's W or KCC (Kendall's Coefficient of Concordance).

List of basic functions:

[1]. IPN_icc: computes the interclass correlations for indexing the reliability analysis according to shrout and fleiss' schema.
Shrout PE, Fleiss JL. Intraclass correlations: uses in assessing rater reliability. Psychol Bull. 1979;86:420-428.
[2]. IPN_ccc: computes the concordance correlation coefficient for evaluating reproducibility.
Lin, L.I. 1989. A Corcordance Correlation Coefficient to Evaluate Reproducibility. Biometrics 45, 255-268.
[3]. IPN_kendallW: computes the Kendall's W.
Kendall, M. G. and Babington Smith, B. 1939. The Problem of m Rankings. The Annals of Mathematical Statistics 10 (3): 275–287.

Papers List:
[1]. Zuo XN, Di Martino A, Kelly C, Shehzad ZE, Gee DG, Klein DF, Castellanos FX, Biswal BB, Milham MP. The oscillating brain: Complex and reliable. Neuroimage 49(2): 1432-1445.
[2]. Zuo XN, Kelly C, Adelstein JS, Klein DF, Castellanos FX, Milham MP. 2010. Reliable Intrinsic Connectivity Networks: Test-Retest Evaluation Using ICA and Dual Regression Approach. NeuroImage, in press.


Intraclass Correlation Coefficient (Icc) inspired this file.

This file inspired Manchester.

MATLAB release MATLAB 6.5.1 (R13SP1)
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Comments and Ratings (4)
25 Apr 2015 Fabrizio Pizzagalli

thank you very much for the code!

I have n subjects acquired 2 times and I would like to perform a test-retest study. Should I use 'single' or 'k' option?
like, IPN_icc([test;test],1,'single') or IPN_icc([test;test],1,'k) ?


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24 Mar 2010 Xi-Nian Zuo

hi dan, can you post your codes to call kendallW function? it should not be the case it is > 1.

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12 Mar 2010 Dan

Dan (view profile)

Hey thanks for uploading this!
I have one question regarding Kendall's coefficient of concordance W: When I choose to correct for ties within the data, I get values > 1. Is that possible? I know it's not supposed to be without correcting for ties.

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19 Oct 2009 Jasper Klewer

IPN_CCC calls the functions IPN_sum and IPN_ssd, which are not in the ZIP file. Could you include these in the package?

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19 Nov 2008 1.2

Deleted several useless files.

22 Nov 2008 1.7

Updates the screen shot!

14 Apr 2009 1.8

Updates for calculation of Kendall's W including a tied rank correction option.

19 Oct 2009 1.10

Added the functions IPN_sum and IPN_ssd and updated the IPN_ccc function with respect to Jasper Klewer's comments.

08 Dec 2009 1.11

Remove the function dependency of IPN_mean and IPN_sum.

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