Code covered by the BSD License  

Highlights from
Siemens DICOM sort and convert to NIfTI

• dicom_sort_convert_main(varar...
• workbar(fractiondone, message... WORKBAR Graphically monitors progress of calculations
• centre_header(nii_hdr) centre nii header files - put the origin at the centre of the image
• convert_2dto3d_func2(obj, eve...
• convert_to_analyze_func(data) get info out of the first DICOM header
• defmossize(N, tszmos)
• dump_struct_func(readfile, fp...
• example_dscm_call a script-call to dicom_sort_convert_main, for performing convertions
• execute_sort_and_convert_Call... whether the conversion is carried out or not depends on the parameter
• get_dicom_fieldname_func(DICO...
• get_header_parameters(data) get the DICOM info out of an example
• get_readfile_stem_func(DICOM_...
• isdicomfile(fname)
• iseven(X)
• isodd(X)
• load_nii(filename, img_idx, d...
• load_nii_hdr(fileprefix)
• load_nii_img(hdr,filetype,fil... internal function
• make_analyze_header(data) voxel size
• make_nii(varargin) Make NIfTI structure specified by an N-D matrix. Usually, N is 3 for
• make_nii_sr(varargin) Make nii structure specified by an N-D matrix. Usually, N is 3 for
• mos2vol(mos, szvol, tszmos)
• mosind2volind(im, szvol, tszm...
• mossub2volsub(rm, cm, szvol, ...
• move_ima_func(data)
• move_report_func(data)
• process_one_slice_func(data, ... do the conversion
• reco_func(writefile_fid, dim_... read the k-space data from the .img file
• reco_raw_data_func(obj,eventd...
• reformat_data_func(data) if the 'Advanced' feature are selected in dicom_sort_convert_main, this
• save_nii(nii, fileprefix, old...
• save_nii_ext(ext, fid) Save NIFTI header extension.
• save_nii_hdr(hdr, fid)
• search_all_header_func(filena... search_all_header_function
• search_text_header_func(filen... search_text_header_function
• select_sort_and_convert_Callb... clear the persistent workbar variables to set the time to zero in case it
• sortlist_func2(flist, field_n...
• stringin=strip_banned_charact...
• tar_ima_func(data) set a subdirectory, or not
• tf=isvar(v) ISVAR True if Variable Exists in Workspace.
• time_string=secs2hms(time_in_... SECS2HMS - converts a time in seconds to a string giving the time in hours, minutes and second
• verify_nii_ext(ext) Verify NIFTI header extension to make sure that each extension section
• write_dcm_text_header(dicom_r... the byte numbers of the starts and ends of the file sections are
• write_introductory_comments(d... get info out of the first DICOM header
• write_scan_details(data) for multi-echo
• xform_nii(nii, tolerance, pre... internal function
• View all files