Genomic signature using FCGR: buildDNAStrand(DNAMatrix) - File Exchange

Code covered by the BSD License

Highlights from
Genomic signature using FCGR

buildComplementarDNA(sequence...
buildDNAStrand(DNAMatrix) Contruye una secuencia dada su representaci
calculateFrecuencies(sequence... Funcion que calcula la frecuencia de 'word' en 'sequence'
fcgr(fastaFile, wordLen) Genomic signature using Chaos game representation of frequencies
fcgr2(fastaFile, wordLen) Genomic signature using Chaos game representation of frequencies (pseudo optimized version)
makeMatrixOfWords (len) Funcion que permite crear una matriz de patrones de palabras.
readFastaFile(fastaFile) Funci
test.m
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from Genomic signature using FCGR by Jesús P. Mena-Chalco
Genomic signature using Chaos game representation of frequencies.

buildDNAStrand(DNAMatrix)

function sequence = buildDNAStrand(DNAMatrix)
% Contruye una secuencia dada su representacin como vector

    DNAMatrix = char(DNAMatrix);
    [nRows, nBases] = size(DNAMatrix);

    for j = 0:nRows*nBases-1
        if (DNAMatrix(floor(j/nBases)+1, mod(j,nBases)+1) ~= ' ')
            sequence(j+1) = DNAMatrix(floor(j/nBases)+1, mod(j,nBases)+1);
        else
            break;
        end;
    end;
end

Highlights from Genomic signature using FCGR

Highlights from
Genomic signature using FCGR